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  1. No Access

    Protocol

    Microfluidic 3D Cytotoxic Assay

    Microfluidic-based cytotoxic assays provide high physiological relevance with the potential to replace conventional animal experiments and two-dimensional (2D) assays. Here, a 3D method utilizing a microfluidi...

    Hyeri Choi, Sunghun Cheong, Ailian **, Dohyun Park in Microfluidics Diagnostics (2024)

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    Protocol

    Liquid Glycan Array

    The M13 phage platform is a stable and monodisperse nanoscale carrier, which can be modified with different molecules by chemical conjugation strategies. Here, we describe M13 phage acylated on pVIII protein w...

    Chih-Lan Lin, Eric J. Carpenter, Taoran Li, Tareq Ahmed in Phage Engineering and Analysis (2024)

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    Protocol

    Prediction of Peptide and TCR CDR3 Loops in Formation of Class I MHC-Peptide-TCR Complexes Using Molecular Models with Solvation

    Formation of major histocompatibility (MHC)-peptide-T cell receptor (TCR) complexes is central to initiation of an adaptive immune response. These complexes form through initial stabilization of the MHC fold v...

    Nairuti Milan Mehta, Yuhui Li, Vini Patel, Wanning Li in Computational Vaccine Design (2023)

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    Protocol

    High-Performance Liquid Chromatography Coupled with Tandem Mass Spectrometry Method for the Identification and Quantification of Lipids in Liposomes

    Liposomes are spherical, closed vesicles consisting of at least one lipid bilayer with a water chamber and are widely used to encapsulate bioactive molecules. Lipid membranes, composed of different types of li...

    Yujie Shi, **aona Li in Liposomes (2023)

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    Protocol

    Cytosolic Calcium Measurement Utilizing a Single-Cell Biochip to Study the Effect of Curcumin and Resveratrol on a Single Glioma Cell

    A microfluidic method has been developed for real-time measurement of the effects of curcumin on the intracellular calcium concentration in a single glioma cell (U87-MG). This method is based on quantitative f...

    Abolfazl Rahimi, Hamide Sharifi, Paul C. H. Li in Single-Cell Assays (2023)

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    Protocol

    Transwell In Vitro Cell Migration and Invasion Assays

    Cell migration and invasion have essential roles in both normal physiology and disease. As such, methodologies to assess cell migratory and invasive capacities are necessary to elucidate normal cell processes ...

    Calvin R. Justus, Mona A. Marie, Edward J. Sanderlin, Li V. Yang in Cell Viability Assays (2023)

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    Protocol

    Digital Microfluidics with an On-Chip Drug Dispenser for Single or Combinational Drug Screening

    Rapid and accurate cancer drug screening is of great importance in precision medicine. However, the limited amount of tumor biopsy samples has hindered the application of traditional drug screening methods wit...

    Caiwei Li, Jiao Zhai, Yanwei Jia in Microfluidic Systems for Cancer Diagnosis (2023)

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    Protocol

    Single-Cell Analysis of circRNA Using ddPCR

    Droplet digital polymerase chain reaction (ddPCR) is a new quantitative PCR method based on water-oil emulsion droplet technology. ddPCR enables highly sensitive and accurate quantification of nucleic acid mol...

    Jiayi Peng, Feng Li, **angdong Xu, Shen Hu in Single-Cell Assays (2023)

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    Protocol

    Preparation and Characterization of Trastuzumab Fab-Conjugated Liposomes (Immunoliposomes)

    Immunoliposomes are made by conjugating antibodies or antibody fragments on liposome surfaces. Antibody fragments Fab’, single-chain Fv fragments (scFv), or new constructs such as nanobodies are commonly used ...

    ShanShan **, Huimin Li, Yuhong Xu in Liposomes (2023)

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    Protocol

    Dielectrophoresis-Assisted Self-Digitization Chip for High-Efficiency Single-Cell Analysis

    Single-cell analysis of cell phenotypic information such as surface protein expression and nucleic acid content is essential for understanding heterogeneity within cell populations. Here the design and use of ...

    Yuling Qin, Li Wu, Daniel T. Chiu in Single-Cell Assays (2023)

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    Protocol

    The PANDORA Software for Anchor-Restrained Peptide:MHC Modeling

    Major histocompatibility complexes ( ) play a key role in the immune surveillance system in all jawed vertebrates. MHC class molecules randomly sample cytosolic peptides from inside the cell, while MHC class...

    Dario F. Marzella, Giulia Crocioni, Farzaneh M. Parizi in Computational Vaccine Design (2023)

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    Protocol

    Acetylcholinesterase Inhibition Assays for High-Throughput Screening

    Acetylcholinesterase (AChE) hydrolyzes acetylcholine (ACh), a vital neurotransmitter that regulates muscle movement and brain function, including memory, attention, and learning. Inhibition of AChE activity ca...

    Shuaizhang Li, Andrew J. Li, **ghua Zhao in High-Throughput Screening Assays in Toxico… (2022)

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    Protocol

    Cell-Based Imaging Assay for Detection of Phospholipidosis

    Accumulation of lysosomal phospholipids in cells exposed to cationic amphiphilic drugs is characteristic of drug-induced phospholipidosis. The morphological hallmark of phospholipidosis is the appearance of un...

    Li Zhang, Shuaizhang Li, Menghang **a in High-Throughput Screening Assays in Toxicology (2022)

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    Protocol

    Cell-Based Assays to Identify Modulators of Nrf2/ARE Pathway

    The nuclear factor erythroid 2-related factor (Nrf2) and antioxidant response element (ARE) signaling pathway play an important role in the amelioration of cellular oxidative stress. Thus, assays that detect t...

    Zhengxi Wei, **ghua Zhao, Li Zhang in High-Throughput Screening Assays in Toxico… (2022)

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    Protocol

    GFP-LC3 High-Content Assay for Screening Autophagy Modulators

    Autophagy plays an important role in maintaining cellular homeostasis. Defects in autophagy have been linked to various human diseases, such as cancer, neurodegenerative diseases, and cardiovascular diseases. ...

    Li Zhang, **ghua Zhao, Wen-**ng Ding in High-Throughput Screening Assays in Toxico… (2022)

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    Protocol

    DNA-Generated Electric Current Biosensor for Epidermal Growth Factor Receptor 2 (HER2) Analysis

    Electrochemical biosensors have been applied in the detection of human serum biomarkers for clinical applications. A kind of signal amplifying method using deoxyribonucleic acid (DNA) as signal probe was devel...

    **aoqing Li, Congcong Shen, Minghui Yang in Biomedical Engineering Technologies (2022)

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    Protocol

    Quantitative and Selective DNA Detection with Portable Personal Glucose Meter Using Loop-Based DNA Competitive Hybridization Strategy

    A portable, quantitative, and selective DNA detection biosensor, based on a loop-based DNA competitive hybridization assay and a personal glucose meter (PGM), is an advanced strategy for one-step target DNA re...

    Fei Liu, Bin Wang, Yanke Shan, Wenjie Kang in Biomedical Engineering Technologies (2022)

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    Protocol

    Extracellular Vesicle Collection from Human Stem Cells Grown in Suspension Bioreactors

    Extracellular vesicles (EVs) are particles with 100–1000 nm sizes which are secreted by cells for intercellular communication. Meanwhile, studies have found that EVs secreted by human stem cells carry similar ...

    Xuegang Yuan, **ngchi Chen, Changchun Zeng in Bioreactors in Stem Cell Biology (2022)

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    Protocol

    A Streptomyces-Based Cell-Free Protein Synthesis System for High-Level Protein Expression

    With the rapid development of cell-free biotechnology, more and more cell-free protein synthesis (CFPS) systems have been established and optimized for protein expression in vitro. Here, we aim to improve the ...

    Huiling Xu, Wan-Qiu Liu, Jian Li in Cell-Free Gene Expression (2022)

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    Protocol

    Construction of Strong Promoters by Assembling Sigma Factor Binding Motifs

    Development of strong promoters is of growing interest in the field of biotechnology and synthetic biology. Here we present a protocol for the construction of strong prokaryotic promoters that can be recognize...

    Yonglin Zhang, Yang Wang, Jianghua Li, Chao Wang, Guocheng Du in Directed Evolution (2022)

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