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  1. No Access

    Protocol

    Microfluidic 3D Cytotoxic Assay

    Microfluidic-based cytotoxic assays provide high physiological relevance with the potential to replace conventional animal experiments and two-dimensional (2D) assays. Here, a 3D method utilizing a microfluidi...

    Hyeri Choi, Sunghun Cheong, Ailian **, Dohyun Park in Microfluidics Diagnostics (2024)

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    Protocol

    Liquid Glycan Array

    The M13 phage platform is a stable and monodisperse nanoscale carrier, which can be modified with different molecules by chemical conjugation strategies. Here, we describe M13 phage acylated on pVIII protein w...

    Chih-Lan Lin, Eric J. Carpenter, Taoran Li, Tareq Ahmed in Phage Engineering and Analysis (2024)

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    Protocol

    Prediction of Peptide and TCR CDR3 Loops in Formation of Class I MHC-Peptide-TCR Complexes Using Molecular Models with Solvation

    Formation of major histocompatibility (MHC)-peptide-T cell receptor (TCR) complexes is central to initiation of an adaptive immune response. These complexes form through initial stabilization of the MHC fold v...

    Nairuti Milan Mehta, Yuhui Li, Vini Patel, Wanning Li in Computational Vaccine Design (2023)

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    Protocol

    Cytosolic Calcium Measurement Utilizing a Single-Cell Biochip to Study the Effect of Curcumin and Resveratrol on a Single Glioma Cell

    A microfluidic method has been developed for real-time measurement of the effects of curcumin on the intracellular calcium concentration in a single glioma cell (U87-MG). This method is based on quantitative f...

    Abolfazl Rahimi, Hamide Sharifi, Paul C. H. Li in Single-Cell Assays (2023)

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    Protocol

    Single-Cell Analysis of circRNA Using ddPCR

    Droplet digital polymerase chain reaction (ddPCR) is a new quantitative PCR method based on water-oil emulsion droplet technology. ddPCR enables highly sensitive and accurate quantification of nucleic acid mol...

    Jiayi Peng, Feng Li, **angdong Xu, Shen Hu in Single-Cell Assays (2023)

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    Protocol

    Dielectrophoresis-Assisted Self-Digitization Chip for High-Efficiency Single-Cell Analysis

    Single-cell analysis of cell phenotypic information such as surface protein expression and nucleic acid content is essential for understanding heterogeneity within cell populations. Here the design and use of ...

    Yuling Qin, Li Wu, Daniel T. Chiu in Single-Cell Assays (2023)

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    Protocol

    The PANDORA Software for Anchor-Restrained Peptide:MHC Modeling

    Major histocompatibility complexes ( ) play a key role in the immune surveillance system in all jawed vertebrates. MHC class molecules randomly sample cytosolic peptides from inside the cell, while MHC class...

    Dario F. Marzella, Giulia Crocioni, Farzaneh M. Parizi in Computational Vaccine Design (2023)

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    Protocol

    Extracellular Vesicle Collection from Human Stem Cells Grown in Suspension Bioreactors

    Extracellular vesicles (EVs) are particles with 100–1000 nm sizes which are secreted by cells for intercellular communication. Meanwhile, studies have found that EVs secreted by human stem cells carry similar ...

    Xuegang Yuan, **ngchi Chen, Changchun Zeng in Bioreactors in Stem Cell Biology (2022)

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    Protocol

    A Streptomyces-Based Cell-Free Protein Synthesis System for High-Level Protein Expression

    With the rapid development of cell-free biotechnology, more and more cell-free protein synthesis (CFPS) systems have been established and optimized for protein expression in vitro. Here, we aim to improve the ...

    Huiling Xu, Wan-Qiu Liu, Jian Li in Cell-Free Gene Expression (2022)

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    Protocol

    Construction of Strong Promoters by Assembling Sigma Factor Binding Motifs

    Development of strong promoters is of growing interest in the field of biotechnology and synthetic biology. Here we present a protocol for the construction of strong prokaryotic promoters that can be recognize...

    Yonglin Zhang, Yang Wang, Jianghua Li, Chao Wang, Guocheng Du in Directed Evolution (2022)

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    Protocol

    Site-Directed Mutagenesis Method Mediated by Cas9

    This study presents an in vitro CRISPR/Cas9-mediated mutagenic (ICM) system that allows rapid construction of designed mutants or site-saturation mutagenesis libraries in a PCR-independent manner. The plasmid ...

    Wan** Chen, Wenwen She, Aitao Li, Chao Zhai, Lixin Ma in Directed Evolution (2022)

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    Protocol

    Detection of Residual Host Cell Proteins in Biotherapeutic Drugs by Concatenated 2D LC-MS/MS

    A sensitive and reliable two-dimensional LC-MS/MS method is described, which detects low level (≥10 ppm) host cell proteins (HCPs) in monoclonal antibody (mAb) drug products. This method applies a high pH–low ...

    Feng Yang, Delia Li, Donald E. Walker in Therapeutic Antibodies (2022)

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    Protocol

    Evaluation of Innate Lymphoid Cells and Dendritic Cells Following Viral Vector Vaccination

    Recently, we have shown that fate of a vaccine is determined by the cytokine milieu in the innate immune compartment at the early stage of vaccination. Specifically, 24 h post-delivery, level of innate lymphoi...

    Zheyi Li, Sreeja Roy, Charani Ranasinghe in Vaccine Technologies for Veterinary Viral … (2022)

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    Protocol

    Cell-Free Noncanonical Redox Cofactor Systems

    Noncanonical redox cofactor systems utilize nicotinamide adenine dinucleotide (phosphate), NAD(P)H, mimics to perform biotransformation reactions. Compared to systems utilizing native NAD(P)H, these noncanonic...

    William B. Black, Han Li in Cell-Free Gene Expression (2022)

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    Protocol

    Development of a Multi-target Protein Biomarker Assay for Circulating Tumor Cells

    We report a highly sensitive and selective CNT-switch liquid biopsy platform that detects and quantifies protein biomarker expressions from circulating tumor cells in blood for early detection of metastatic br...

    Diya Li, Ceming Wang, Yingjia Ni, Yao** Liu in Biomedical Engineering Technologies (2022)

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    Protocol

    Node-Pore Sensing for Characterizing Cells and Extracellular Vesicles

    Node-Pore Sensing, NPS, is an extremely versatile and powerful technique for the analysis of cells and the detection of extracellular vesicles (EVs). NPS involves measuring the modulated current pulse caused b...

    Thomas Carey, Brian Li, Lydia L. Sohn in Biomedical Engineering Technologies (2022)

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    Protocol

    Ligand-Directed GPCR Antibody Discovery

    Develo** affinity reagents recognizing and modulating G-protein coupled receptors (GPCR) function by traditional animal immunization or in vitro screening methods is challenging. Some anti-GPCR antibodies ex...

    Qi Zhao, Amanda Chapman, Yan Huang, Mary Ferguson in Biomedical Engineering Technologies (2022)

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    Protocol

    Chemical Modification of Proteins and Their Intracellular Delivery Using Lipidoid Nanoparticles

    Protein-based therapeutics are a class of drugs considered to be one of most safe and straightforward approaches for manipulating cell function and treating diseases. However, in contrast to traditional small-...

    Yamin Li, Zachary Glass, Qiaobing Xu in Biomedical Engineering Technologies (2022)

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    Protocol

    Low-Voltage Continuous Electrospinning: A Versatile Protocol for Patterning Nano- and Micro-Scaled Fibers for Cell Interface

    Nano- and micro-scaled fibers have been incorporated in a number of applications in biofabrication and tissue cultures, providing a cell interfacing structure with extracellular matrix-mimicking topography and...

    Zhaoying Li, **a Li, Yan Yan Shery Huang in Computer-Aided Tissue Engineering (2021)

  20. No Access

    Protocol

    Raman Cryomicroscopic Imaging and Sample Holder for Spectroscopic Subzero Temperature Measurements

    Raman spectroscopy has been gaining in popularity for noninvasive analysis of single cells. Raman spectra and images deliver meaningful information regarding the biochemical, biophysical, and structural proper...

    Guanglin Yu, Rui Li, Allison Hubel in Cryopreservation and Freeze-Drying Protocols (2021)

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