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  1. Article

    Open Access

    Improving laboratory animal genetic reporting: LAG-R guidelines

    The biomedical research community addresses reproducibility challenges in animal studies through standardized nomenclature, improved experimental design, transparent reporting, data sharing, and centralized re...

    Lydia Teboul, James Amos-Landgraf, Fernando J. Benavides in Nature Communications (2024)

  2. Article

    Open Access

    Development of two mouse strains conditionally expressing bright luciferases with distinct emission spectra as new tools for in vivo imaging

    In vivo bioluminescence imaging (BLI) has been an invaluable noninvasive method to visualize molecular and cellular behaviors in laboratory animals. Bioluminescent reporter mice harboring luciferases for gener...

    Toshiaki Nakashiba, Katsunori Ogoh, Satoshi Iwano, Takashi Sugiyama in Lab Animal (2023)

  3. Article

    Open Access

    Genetic quality: a complex issue for experimental study reproducibility

    Laboratory animal research involving mice, requires consideration of many factors to be controlled. Genetic quality is one factor that is often overlooked but is essential for the generation of reproducible ex...

    Atsushi Yoshiki, Gregory Ballard, Ana V. Perez in Transgenic Research (2022)

  4. Article

    Open Access

    Mouse resources at the RIKEN BioResource Research Center and the National BioResource Project core facility in Japan

    The RIKEN BioResource Research Center (BRC) was established in 2001 as a comprehensive biological resource center in Japan. The Experimental Animal Division, one of the BRC infrastructure divisions, has been d...

    Saori Mizuno-Iijima, Toshiaki Nakashiba, Shinya Ayabe, Hatsumi Nakata in Mammalian Genome (2022)

  5. Article

    Open Access

    MoG+: a database of genomic variations across three mouse subspecies for biomedical research

    Laboratory mouse strains have mosaic genomes derived from at least three major subspecies that are distributed in Eurasia. Here, we describe genomic variations in ten inbred strains: Mus musculus musculus-derived...

    Toyoyuki Takada, Kentaro Fukuta, Daiki Usuda, Tatsuya Kushida in Mammalian Genome (2022)

  6. Article

    Asian Mouse Mutagenesis Resource Association (AMMRA): mouse genetics and laboratory animal resources in the Asia Pacific

    The Asian Mouse Mutagenesis Resource Association (AMMRA) is a non-profit organization consisting of major resource and research institutions with rodent expertise from within the Asia Pacific region. For more ...

    Hsian-Jean Chin, Michael S. Dobbie, **ang Gao, James E. Hennessy in Mammalian Genome (2022)

  7. Article

    Open Access

    Response to correspondence on “Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles: a multi-center evaluation”

    Channabasavaiah B. Gurumurthy, Aidan R. O’Brien, Rolen M. Quadros in Genome Biology (2021)

  8. No Access

    Article

    A resource of targeted mutant mouse lines for 5,061 genes

    The International Mouse Phenoty** Consortium reports the generation of new mouse mutant strains for more than 5,000 genes, including 2,850 novel null, 2,987 novel conditional-ready and 4,433 novel reporter a...

    Marie-Christine Birling, Atsushi Yoshiki, David J. Adams, Shinya Ayabe in Nature Genetics (2021)

  9. Article

    Open Access

    Establishment and application of information resource of mutant mice in RIKEN BioResource Research Center

    Online databases are crucial infrastructures to facilitate the wide effective and efficient use of mouse mutant resources in life sciences. The number and types of mouse resources have been rapidly growing due...

    Hiroshi Masuya, Daiki Usuda, Hatsumi Nakata, Naomi Yuhara in Laboratory Animal Research (2021)

  10. Article

    Open Access

    Reverse genetics reveals single gene of every candidate on Hybrid sterility, X Chromosome QTL 2 (Hstx2) are dispensable for spermatogenesis

    F1 hybrid progenies between related subspecies often show hybrid sterility (HS) or inviability. HS is caused by failure of meiotic chromosome synapsis and sex body formation in house mouse. Previous studies id...

    Kento Morimoto, Koki Numata, Yoko Daitoku, Yuko Hamada in Scientific Reports (2020)

  11. Article

    Open Access

    Pathogenic POGZ mutation causes impaired cortical development and reversible autism-like phenotypes

    Pogo transposable element derived with ZNF domain (POGZ) has been identified as one of the most recurrently de novo mutated genes in patients with neurodevelopmental disorders (NDDs), including autism spectrum di...

    Kensuke Matsumura, Kaoru Seiriki, Shota Okada, Masashi Nagase in Nature Communications (2020)

  12. Article

    Open Access

    Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles: a multi-center evaluation

    CRISPR-Cas9 gene-editing technology has facilitated the generation of knockout mice, providing an alternative to cumbersome and time-consuming traditional embryonic stem cell-based methods. An earlier study re...

    Channabasavaiah B. Gurumurthy, Aidan R. O’Brien, Rolen M. Quadros in Genome Biology (2019)

  13. Article

    Correction: Corrigendum: High-throughput discovery of novel developmental phenotypes

    Nature 537, 508–514 (2016); doi:10.1038/nature19356 In this Article, the author Wolfgang Wurst was erroneously omitted from the author list. They are associated with the affiliations: HelmholtzZentrum Munich, ...

    Mary E. Dickinson, Ann M. Flenniken, **ao Ji, Lydia Teboul, Michael D. Wong in Nature (2017)

  14. No Access

    Article

    High-throughput discovery of novel developmental phenotypes

    Approximately one-third of all mammalian genes are essential for life. Phenotypes resulting from knockouts of these genes in mice have provided tremendous insight into gene function and congenital disorders. A...

    Mary E. Dickinson, Ann M. Flenniken, **ao Ji, Lydia Teboul, Michael D. Wong in Nature (2016)

  15. No Access

    Article

    NIG_MoG: a mouse genome navigator for exploring intersubspecific genetic polymorphisms

    The National Institute of Genetics Mouse Genome database (NIG_MoG; http://molossinus.lab.nig.ac.jp/msmdb/) primarily comprises the whole-genome sequence data...

    Toyoyuki Takada, Atsushi Yoshiki, Yuichi Obata, Yukiko Yamazaki in Mammalian Genome (2015)

  16. Article

    Open Access

    Effects of background mutations and single nucleotide polymorphisms (SNPs) on the Disc1 L100P behavioral phenotype associated with schizophrenia in mice

    Disrupted-in-schizophrenia 1 (DISC1) is a promising candidate susceptibility gene for psychiatric disorders, including schizophrenia, bipolar disorder and major depression. Several previous studies reported th...

    Yosefu Arime, Ryutaro Fukumura, Ikuo Miura in Behavioral and Brain Functions (2014)

  17. No Access

    Chapter and Conference Paper

    Development of Linked Open Data for Bioresources

    The broad dissemination of information is a key issue in improving access to existing bioresources. We attempted to develop Linked Open Data (LOD) for bioresources available at the RIKEN BioResource Center. Th...

    Hiroshi Masuya, Terue Takatsuki, Yuko Makita, Yuko Yoshida in Semantic Technology (2013)

  18. Article

    Open Access

    Kbus/Idr, a mutant mouse strain with skeletal abnormalities and hypophosphatemia: Identification as an allele of 'Hyp'

    The endopeptidase encoded by Phex (phosphate-regulating gene with homologies to endopeptidases linked to the X chromosome) is critical for regulation of bone matrix mineralization and phosphate homeostasis. PHEX ...

    Kenji Moriyama, Atsuko Hanai, Kazuyuki Mekada in Journal of Biomedical Science (2011)

  19. No Access

    Article

    Establishment of germline-competent embryonic stem cell lines from the MSM/Ms strain

    MSM/Ms is an inbred mouse strain established from the Japanese wild mouse, Mus musculus molossinus, which has been phylogenetically distinct from common laboratory mouse strains for about 1 million years. The nuc...

    Kimi Araki, Naoki Takeda, Atsushi Yoshiki, Yuichi Obata, Naomi Nakagata in Mammalian Genome (2009)

  20. No Access

    Article

    A new role for expressed pseudogenes as ncRNA: regulation of mRNA stability of its homologous coding gene

    We have earlier generated a mutant mouse in a course of making a transgenic line that exhibited interesting heterozygote phenotypes, which exhibited failure to thrive, severe bone deformities, and polycystic k...

    Yoshihisa Yano, Rintaro Saito, Noriyuki Yoshida in Journal of Molecular Medicine (2004)

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