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  1. No Access

    Chapter and Conference Paper

    Determining Optimal Placement of Copy Number Aberration Impacted Single Nucleotide Variants in a Tumor Progression History

    Intratumoral heterogeneity arises as a result of genetically distinct subclones emerging during tumor progression. These subclones are characterized by various types of somatic genomic aberrations, with single...

    Chih Hao Wu, Suraj Joshi, Welles Robinson in Research in Computational Molecular Biology (2024)

  2. No Access

    Article

    A machine learning model for ranking candidate HLA class I neoantigens based on known neoepitopes from multiple human tumor types

    Tumor neoepitopes presented by major histocompatibility complex (MHC) class I are recognized by tumor-infiltrating lymphocytes (TIL) and are targeted by adoptive T-cell therapies. Identifying which mutant neoe...

    Jared J. Gartner, Maria R. Parkhurst, Alena Gros, Eric Tran in Nature Cancer (2021)

  3. No Access

    Reference Work Entry In depth

    Immunology of Melanoma

    Historically, the basis of cancer immunology comes from observations of therapy for cancer dating back to antiquity indicating that the immune system can recognize and reject cancers. Ancient Eastern and Weste...

    Paul F. Robbins, Yong-Chen Lu in Cutaneous Melanoma (2020)

  4. Article

    Open Access

    Memory T cells targeting oncogenic mutations detected in peripheral blood of epithelial cancer patients

    T cells targeting shared oncogenic mutations can induce durable tumor regression in epithelial cancer patients. Such T cells can be detected in tumor infiltrating lymphocytes, but whether such cells can be det...

    Gal Cafri, Rami Yossef, Anna Pasetto, Drew C. Deniger in Nature Communications (2019)

  5. No Access

    Living Reference Work Entry In depth

    Immunology of Melanoma

    Historically, the basis of cancer immunology comes from observations of therapy for cancer dating back to antiquity indicating that the immune system can recognize and reject cancers. Ancient Eastern and Weste...

    Paul F. Robbins, Yong-Chen Lu in Cutaneous Melanoma

  6. No Access

    Article

    Immune recognition of somatic mutations leading to complete durable regression in metastatic breast cancer

    Immunotherapy using either checkpoint blockade or the adoptive transfer of antitumor lymphocytes has shown effectiveness in treating cancers with high levels of somatic mutations—such as melanoma, smoking-indu...

    Nikolaos Zacharakis, Harshini Chinnasamy, Mary Black, Hui Xu in Nature Medicine (2018)

  7. No Access

    Article

    'Final common pathway' of human cancer immunotherapy: targeting random somatic mutations

    Rosenberg and colleagues review evidence suggesting that T cells that target tumor neoantigens arising from cancer mutations are the main mediators of many effective cancer immunotherapies in humans.

    Eric Tran, Paul F Robbins, Steven A Rosenberg in Nature Immunology (2017)

  8. Article

    Open Access

    31st Annual Meeting and Associated Programs of the Society for Immunotherapy of Cancer (SITC 2016): part one

    Andreas Lundqvist, Vincent van Hoef, **aonan Zhang in Journal for ImmunoTherapy of Cancer (2016)

  9. No Access

    Article

    Prospective identification of neoantigen-specific lymphocytes in the peripheral blood of melanoma patients

    Steven Rosenberg and colleagues report that PD-1 is a biomarker of CD8+ T cells in the blood that recognize mutated neoantigens in melanoma.

    Alena Gros, Maria R Parkhurst, Eric Tran, Anna Pasetto, Paul F Robbins in Nature Medicine (2016)

  10. Article

    Open Access

    A Phase I study of an HLA-DPB1*0401-restricted T cell receptor targeting MAGE-A3 for patients with metastatic cancers

    Yong-Chen Lu, Linda Parker, Tangying Lu, Zhili Zheng in Journal for ImmunoTherapy of Cancer (2015)

  11. Article

    Open Access

    Diversity of mutated antigen recognition by tumor infiltrating lymphocytes from patients with metastatic melanoma

    Jessica S Crystal, Todd D Prickett, Jared J Gartner in Journal for ImmunoTherapy of Cancer (2015)

  12. Article

    Open Access

    Selection of circulating PD-1+ lymphocytes from cancer patients enriches for tumor-reactive and mutation-specific lymphocytes

    Alena Gros, Eric Tran, Maria R Parkhurst in Journal for ImmunoTherapy of Cancer (2015)

  13. Article

    Open Access

    Discovery and characterization of an immunogenic neoantigen in a patient with metastatic triple negative breast cancer

    Yasmine Assadipour, Stephanie Goff in Journal for ImmunoTherapy of Cancer (2015)

  14. Article

    Open Access

    Identification of mutation-specific tumor infiltrating lymphocytes from metastatic ovarian cancer

    Drew C Deniger, Mini Bharathan, Pasetto Anna in Journal for ImmunoTherapy of Cancer (2015)

  15. Article

    Open Access

    Personalized immunotherapy for non-small cell lung cancer through identification of tumor-specific mutations by next generation sequencing and adoptive transfer of tumor infiltrating lymphocytes that recognize neoantigens

    Ken-ichi Hanada, Christopher Chow, Raul Gil Hoyos in Journal for ImmunoTherapy of Cancer (2015)

  16. Article

    Open Access

    Unique neoantigens expressed by melanomas and common epithelial cancers presented by multiple HLA alleles can be efficiently identified utilizing peptide prediction algorithms

    Kasia Trebska-Mcgowan, Mini Bharathan in Journal for ImmunoTherapy of Cancer (2015)

  17. Article

    Open Access

    High frequency CD8+PD-1+ TCR clonotypes isolated from fresh melanomas display anti-tumor activity

    Pasetto Anna, Alena Gros, Paul F Robbins in Journal for ImmunoTherapy of Cancer (2015)

  18. Article

    Open Access

    Adoptively transferred tumor-infiltrating T cells target somatic cancer mutations in a human papillomavirus+ cancer patient with complete tumor regression

    Sanja Stevanović, Pasetto Anna, Jared J Gartner in Journal for ImmunoTherapy of Cancer (2015)

  19. Article

    Open Access

    Study and characterization of mutated antigen specific T cells isolated from fresh tumor and peripheral lymphocytes in cancer patients

    Cyrille Cohen, Jared J Gartner in Journal for ImmunoTherapy of Cancer (2015)

  20. Article

    Open Access

    Tetramer based approach for efficient identification and isolation of neo-antigen specific CD8 T cells from peripheral blood (PBL) of patients with metastatic cancers

    Mini Bharathan, Katarina Trebska-McGowan in Journal for ImmunoTherapy of Cancer (2015)

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