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  1. Article

    Open Access

    Multiomics analysis of serial PARP inhibitor treated metastatic TNBC inform on rational combination therapies

    In a pilot study, we evaluated the feasibility of real-time deep analysis of serial tumor samples from triple negative breast cancer patients to identify mechanisms of resistance and treatment opportunities as...

    Marilyne Labrie, Allen Li, Allison Creason, Courtney Betts in npj Precision Oncology (2021)

  2. Article

    Open Access

    Characterizing advanced breast cancer heterogeneity and treatment resistance through serial biopsies and comprehensive analytics

    Molecular heterogeneity in metastatic breast cancer presents multiple clinical challenges in accurately characterizing and treating the disease. Current diagnostic approaches offer limited ability to assess he...

    Allen Li, Jamie M. Keck, Swapnil Parmar, Janice Patterson in npj Precision Oncology (2021)

  3. No Access

    Article

    Colorectal Cancer-Associated Spontaneous Tumor Lysis Syndrome: a Case Report and Review of the Current Literature

    Matthew R. Kearney, Emerson Y. Chen, Peter Stenzel in Journal of Gastrointestinal Cancer (2019)

  4. Article

    Open Access

    Loss of the PTCH1 tumor suppressor defines a new subset of plexiform fibromyxoma

    Plexiform fibromyxoma (PF) is a rare gastric tumor often confused with gastrointestinal stromal tumor. These so-called “benign” tumors often present with upper GI bleeding and gastric outlet obstruction. It wa...

    Sudeep Banerjee, Christopher L. Corless in Journal of Translational Medicine (2019)

  5. Article

    Open Access

    Genomic aberrations in cell cycle genes predict progression of KIT-mutant gastrointestinal stromal tumors (GISTs)

    Activating mutations of the receptor tyrosine kinase KIT are early events in the development of most gastrointestinal stromal tumors (GISTs). Although GISTs generally remain dependent on oncogenic KIT during tumo...

    Michael C. Heinrich, Janice Patterson, Carol Beadling in Clinical Sarcoma Research (2019)

  6. Article

    Open Access

    Implementing a comprehensive translational oncology platform: from molecular testing to actionability

    In order to establish the workflows required to implement a real-time process involving multi-omic analysis of patient samples to support precision-guided therapeutic intervention, a tissue acquisition and ana...

    Zahi I. Mitri, Swapnil Parmar, Brett Johnson in Journal of Translational Medicine (2018)

  7. Article

    Open Access

    MAX inactivation is an early event in GIST development that regulates p16 and cell proliferation

    KIT, PDGFRA, NF1 and SDH mutations are alternate initiating events, fostering hyperplasia in gastrointestinal stromal tumours (GISTs), and additional genetic alterations are required for progression to malignancy...

    Inga-Marie Schaefer, Yuexiang Wang, Cher-wei Liang, Nacef Bahri in Nature Communications (2017)

  8. Article

    Open Access

    FGFR1 and NTRK3 actionable alterations in “Wild-Type” gastrointestinal stromal tumors

    About 10–15% of adult, and most pediatric, gastrointestinal stromal tumors (GIST) lack mutations in KIT, PDGFRA, SDHx, or RAS pathway components (KRAS, BRAF, NF1). The identification of additional mutated gene...

    Eileen Shi, Juliann Chmielecki, Chih-Min Tang in Journal of Translational Medicine (2016)

  9. Article

    Open Access

    IGF1R as a Key Target in High Risk, Metastatic Medulloblastoma

    Risk or presence of metastasis in medulloblastoma causes substantial treatment-related morbidity and overall mortality. Through the comparison of cytokines and growth factors in the cerebrospinal fluid (CSF) o...

    Matthew N. Svalina, Ken Kikuchi, **u Abraham, Sangeet Lal in Scientific Reports (2016)

  10. Article

    Open Access

    SDHC methylation in gastrointestinal stromal tumors (GIST): a case report

    Gastrointestinal stromal tumors (GIST) recently have been recognized as a genetically and biologically heterogeneous disease. In addition to KIT or PDGFRA mutated GIST, mutational inactivation of succinate dehydr...

    Milena Urbini, Annalisa Astolfi, Valentina Indio in BMC Medical Genetics (2015)

  11. Article

    Open Access

    Integrated genomic study of quadruple-WT GIST (KIT/PDGFRA/SDH/RAS pathway wild-type GIST)

    About 10-15% of adult gastrointestinal stromal tumors (GIST) and the vast majority of pediatric GIST do not harbour KIT or platelet-derived growth factor receptor alpha (PDGFRA) mutations (J Clin Oncol 22:3813–38...

    Margherita Nannini, Annalisa Astolfi, Milena Urbini, Valentina Indio in BMC Cancer (2014)

  12. No Access

    Article

    Gastrointestinal stromal tumours: origin and molecular oncology

  13. Gastrointestinal stromal tumours (GISTs) are a family of tumours thought to arise from the interstitial cells of Cajal in the gastrointestinal tract. Recently,...

  14. Christopher L. Corless, Christine M. Barnett, Michael C. Heinrich in Nature Reviews Cancer (2011)

  15. No Access

    Article

    Novel Biomarker Candidates to Predict Hepatic Fibrosis in Hepatitis C Identified by Serum Proteomics

    Liver biopsy remains the gold standard to assess hepatic fibrosis. It is desirable to predict hepatic fibrosis without the need for invasive liver biopsy. Proteomic techniques allow unbiased assessment of prot...

    Libang Yang, Kyle D. Rudser, LeeAnn Higgins in Digestive Diseases and Sciences (2011)

  16. No Access

    Article

    Oncogenes in context

    In certain types of gastrointestinal cell, mutations in the protein KIT give rise to gastrointestinal stromal tumours. Why are other cell types that express KIT not affected? The answer lies with a second prot...

    Michael C. Heinrich, Christopher L . Corless in Nature (2010)

  17. No Access

    Article

    Absence of BRAF, NRAS, KRAS, HRAS Mutations, and RET/PTC Gene Rearrangements Distinguishes Dominant Nodules in Hashimoto Thyroiditis from Papillary Thyroid Carcinomas

    Dominant nodules within Hashimoto thyroiditis (HT) may present with unique morphological features that overlap with but are not diagnostic of papillary thyroid carcinoma (PTC). Activating BRAF point mutations, RA...

    Peter M. Sadow, Michael C. Heinrich, Christopher L. Corless in Endocrine Pathology (2010)

  18. No Access

    Article

    Phosphatidylinositol-3-kinase and AKT1 mutations occur early in breast carcinoma

    Mutationally activated protein kinases are appealing therapeutic targets in breast carcinoma. Mutations in phosphatidylinositol-3-kinase (PI3KCA) have been described in 8–40% of invasive breast carcinomas, and AK...

    Jennifer Dunlap, Claudia Le, Arielle Shukla in Breast Cancer Research and Treatment (2010)

  19. No Access

    Article

    Percutaneous Vein Occlusion with Small Intestinal Submucosa: An Experimental Pilot Study in Swine and Sheep

    The objective of this study was to investigate the feasibility, outcomes, and amount of small intestinal submucosa (SIS) material needed for embolization of jugular vein (JV) in a swine and sheep model. Our hy...

    Man Deuk Kim, Hanno Hoppe, Dusan Pavcnik in CardioVascular and Interventional Radiology (2007)

  20. No Access

    Article

    Does tumor mutational status correlate with clinical response to imatinib?

    Michael C Heinrich, Christopher L Corless in Nature Clinical Practice Oncology (2006)

  21. No Access

    Article

    Effects of Blood Flow and/or Ventilation Restriction on Radiofrequency Coagulation Size in the Lung: An Experimental Study in Swine

    The purpose of this study was to investigate how the restriction of blood flow and/or ventilation affects the radiofrequency (RF) ablation coagulation size in lung parenchyma. Thirty-one RF ablations were done...

    Hiroshi Anai, Barry T. Uchida, Dusan Pavcnik in CardioVascular and Interventional Radiology (2006)

  22. No Access

    Article

    Experimental Percutaneous Extrahepatic Portacaval Shunt Creation by Transjugular Approach in Swine

    The purpose of the study was to evaluate the feasibility of the creation of a percutaneous extrahepatic portacaval shunt (PEPS) in swine by a transjugular approach and to find a suitable stent-graft to use in ...

    Chang Kyu Seong, Dusan Pavcnik in CardioVascular and Interventional Radiology (2005)

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