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  1. Article

    Open Access

    Cell-type-specific aging clocks to quantify aging and rejuvenation in neurogenic regions of the brain

    The diversity of cell types is a challenge for quantifying aging and its reversal. Here we develop ‘aging clocks’ based on single-cell transcriptomics to characterize cell-type-specific aging and rejuvenation....

    Matthew T. Buckley, Eric D. Sun, Benson M. George, Ling Liu in Nature Aging (2023)

  2. Article

    Open Access

    Radiotherapy in combination with CD47 blockade elicits a macrophage-mediated abscopal effect

    Radiation therapy is a mainstay of cancer treatment but does not always lead to complete tumor regression. Here we combine radiotherapy with blockade of the ‘don’t-eat-me’ cell-surface molecule CD47 in small c...

    Yoko Nishiga, Alexandros P. Drainas, Maya Baron, Debadrita Bhattacharya in Nature Cancer (2022)

  3. No Access

    Article

    The pleiotropic benefits of statins include the ability to reduce CD47 and amplify the effect of pro-efferocytic therapies in atherosclerosis

    The pleiotropic benefits of statins may result from their impact on vascular inflammation. The molecular process underlying this phenomenon is not fully elucidated. In the present study, RNA-sequencing designe...

    Kai-Uwe Jarr, Jianqin Ye, Yoko Kojima, Zhongde Ye in Nature Cardiovascular Research (2022)

  4. No Access

    Article

    De novo mutations in mitochondrial DNA of iPSCs produce immunogenic neoepitopes in mice and humans

    The utility of autologous induced pluripotent stem cell (iPSC) therapies for tissue regeneration depends on reliable production of immunologically silent functional iPSC derivatives. However, rejection of auto...

    Tobias Deuse, **aomeng Hu, Sean Agbor-Enoh, Martina Koch in Nature Biotechnology (2019)

  5. No Access

    Article

    Regenerating the field of cardiovascular cell therapy

    The retraction of >30 falsified studies by Anversa et al. has had a disheartening impact on the cardiac cell therapeutics field. The premise of heart muscle regeneration by the transdifferentiation of bone mar...

    Kenneth R. Chien, Jonas Frisén, Regina Fritsche-Danielson in Nature Biotechnology (2019)

  6. No Access

    Article

    Isolation and functional assessment of mouse skeletal stem cell lineage

    A flow cytometry–based approach using eight surface markers is used to distinguish cells of the skeletal stem cell lineage. Renal subcapsular transplantation and in vitro colony-formation assays are also describe...

    Gunsagar S Gulati, Matthew P Murphy, Owen Marecic, Michael Lopez in Nature Protocols (2018)

  7. No Access

    Article

    Computational correction of index switching in multiplexed sequencing libraries

    Anton J M Larsson, Geoff Stanley, Rahul Sinha, Irving L Weissman in Nature Methods (2018)

  8. No Access

    Protocol

    Immunogenicity of In Vitro Maintained and Matured Populations: Potential Barriers to Engraftment of Human Pluripotent Stem Cell Derivatives

    The potential to develop into any cell type makes human pluripotent stem cells (hPSCs) one of the most promising sources for regenerative treatments. Hurdles to their clinical applications include (1) formatio...

    Chad Tang, Irving L. Weissman, Micha Drukker in Embryonic Stem Cell Immunobiology (2013)

  9. No Access

    Article

    Identification and prospective isolation of a mesothelial precursor lineage giving rise to smooth muscle cells and fibroblasts for mammalian internal organs, and their vasculature

    Fibroblasts and smooth muscle cells (FSMCs) are principal cell types of connective and adventitial tissues that participate in the development, physiology and pathology of internal organs, with incompletely de...

    Yuval Rinkevich, Taisuke Mori, Debashis Sahoo, Pin-**an Xu in Nature Cell Biology (2012)

  10. No Access

    Article

    Isolation of primitive endoderm, mesoderm, vascular endothelial and trophoblast progenitors from human pluripotent stem cells

    Drukker and colleagues differentiated human embryonic stem (ES) cells for 3 days and screened the cells for labeling by >400 antibodies. They identified cell-surface markers expressed on four classes of early ...

    Micha Drukker, Chad Tang, Reza Ardehali, Yuval Rinkevich, Jun Seita in Nature Biotechnology (2012)

  11. No Access

    Article

    Tracking single hematopoietic stem cells in vivo using high-throughput sequencing in conjunction with viral genetic barcoding

    Heterogeneity within populations of stem cells, cancer cells or other cell types of interest presents a formidable barrier to analysis. Lu et al. use viral barcoding and high-throughput sequencing to track the di...

    Rong Lu, Norma F Neff, Stephen R Quake, Irving L Weissman in Nature Biotechnology (2011)

  12. No Access

    Article

    An antibody against SSEA-5 glycan on human pluripotent stem cells enables removal of teratoma-forming cells

    Using cells derived from human pluripotent stem cells for therapeutic applications carries a risk that rare undifferentiated cells in the transplant will give rise to teratomas. Tang et al. identify a new antigen...

    Chad Tang, Andrew S Lee, Jens-Peter Volkmer, Debashis Sahoo in Nature Biotechnology (2011)

  13. No Access

    Article

    In vivo evaluation of human hematopoiesis through xenotransplantation of purified hematopoietic stem cells from umbilical cord blood

    Establishment of robust xenograft models is critical to studying human hematopoiesis in a physiologic setting. Using a recently developed immunodeficient mouse strain, we have established long-term multilineag...

    Christopher Y Park, Ravindra Majeti, Irving L Weissman in Nature Protocols (2008)

  14. No Access

    Article

    Hematopoietic stem cells

    This review focuses on the genomics of mouse hematopoiesis but also draws parallels to other systems and discusses issues common to the analysis of rare populations such as stem cells. As examples from the mou...

    E. Camilla Forsberg, Deepta Bhattacharya, Irving L. Weissman in Stem Cell Reviews (2006)

  15. No Access

    Article

    Construction and Characterization of Large-Insert Genomic Libraries (BAC and Fosmid) from the Ascidian Botryllus schlosseri and Initial Physical Map** of a Histocompatibility Locus

    The colonial protochordate Botryllus schlosseri is genetically manipulable and represents a potential model organism for a variety of biological disciplines, including immunology, stem cell biology and developmen...

    Anthony W. De Tomaso, Irving L. Weissman in Marine Biotechnology (2003)

  16. No Access

    Chapter

    Formation and Differentiation of Leukocytes

    Inflammatory responses often involve the selective accumulation in tissues of complex mixtures of leukocytes. In order to understand the processes governing migration and accumulation of mature leukocytes, it ...

    Douglas E. Wright, Irving L. Weissman in Physiology of Inflammation (2001)

  17. No Access

    Chapter

    T-Cell Development from Hematopoietic Stem Cells

    The central cells of the immune system include three major populations of lymphocytes with distinct antigen recognition receptors: T-cells, B-cells, and natural killer (NK) cells. All lymphocyte populations, a...

    Koichi Akashi, Motonari Kondo in Molecular Biology of B-Cell and T-Cell Dev… (1998)

  18. No Access

    Chapter

    Retreat Growth in the Ascidian Botryllus Schlosseri: A Consequence of Nonself Recognition

    In the genus Botryllus fusion between genetically distinct individuals is controlled by a single genetic locus (or haplotype) with multiple codominantly expressed alleles. Colonies which do not share an allele at...

    Baruch Rinkevich, Irving L. Weissman in Invertebrate Historecognition (1988)

  19. No Access

    Chapter

    Speculations on the Relationships of Two Botryllus Allo-Recognition Reactions—Colony Specificity and Resorption—To Vertebrate Histocompatibility

    The objective of this essay is to consider functions of the vertebrate major histocompatibility complex (MHC), especially in comparison to allorecognition in colonial tunicates. Elsewhere Burnet (1971), and ou...

    Irving L. Weissman, Virginia Scofield, Yasunori Saito in Invertebrate Historecognition (1988)

  20. No Access

    Chapter

    Lymphocyte Homing Receptors, Ubiquitin, and Cell Surface Proteins

    The immune system, unlike most organ systems that are consolidated in one anatomic location, is dispersed over an entire organism. It exists as circulating elements in the blood, through which it gains access ...

    Mark Siegelman, Irving L. Weissman in Ubiquitin (1988)

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