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Phylogenomics, divergence times and notes of orders in Basidiomycota

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  1. Article

    Open Access

    Population structure and selection signal analysis of indigenous sheep from the southern edge of the Taklamakan Desert

    Analyzing the genetic diversity and selection characteristics of sheep (Ovis aries) holds significant value in understanding their environmental adaptability, enhancing breeding efficiency, and achieving effec...

    Zhi-peng Han, Rui-zhi Yang, Wen Zhou, Lu-lu Zhang, Jie-ru Wang in BMC Genomics (2024)

  2. Article

    Open Access

    Integration of large and diverse angiosperm DNA fragments into Asian Gnetum mitogenomes

    Horizontal gene transfer (HGT) events have rarely been reported in gymnosperms. Gnetum is a gymnosperm genus comprising 25‒35 species sympatric with angiosperms in West African, South American, and Southeast Asia...

    Chung-Shien Wu, Rui-Jiang Wang, Shu-Miaw Chaw in BMC Biology (2024)

  3. Article

    Open Access

    Mechanical models and measurement methods of solid stress in tumors

    In addition to genetic mutations, biomechanical factors also affect the structures and functions of the tumors during tumor growth, including solid stress, interstitial fluid pressure, stiffness, and microarch...

    Yingwei Bi, Jiacheng **, Rui Wang, Yuxin Liu in Applied Microbiology and Biotechnology (2024)

  4. Article

    Open Access

    Endothelial progenitor cell-derived extracellular vesicles: the world of potential prospects for the treatment of cardiovascular diseases

    Cardiovascular diseases (CVDs) have emerged as a predominant threat to human health, surpassing the incidence and mortality rates of neoplastic diseases. Extracellular vesicles (EVs) serve as vital mediators i...

    De-**n Chen, Chuang-Hong Lu, Na Na, Rui-**ng Yin, Feng Huang in Cell & Bioscience (2024)

  5. Article

    Open Access

    Establishment of an in vitro model of monocyte-like THP-1 cells for trained immunity induced by bacillus Calmette-Guérin

    Mycobacteria bloodstream infections are common in immunocompromised people and usually have disastrous consequences. As the primary phagocytes in the bloodstream, monocytes and neutrophils play critical roles ...

    **-Chuan Xu, Kang Wu, Rui-qing Ma, Jian-hui Li, Jie Tao, Zhidong Hu in BMC Microbiology (2024)

  6. Article

    Open Access

    Analysis of endophytic bacterial diversity in seeds of different genotypes of cotton and the suppression of Verticillium wilt pathogen infection by a synthetic microbial community

    In agricultural production, fungal diseases significantly impact the yield and quality of cotton (Gossypium spp.) with Verticillium wilt posing a particularly severe threat.

    Chong-Die Wu, Yong-Bin Fan, Xue Chen, Jiang-Wei Cao, **g-Yi Ye in BMC Plant Biology (2024)

  7. Article

    Open Access

    Thrombomodulin reduces α-synuclein generation and ameliorates neuropathology in a mouse model of Parkinson’s disease

    The neurotoxic α-synuclein (α-syn) oligomers play an important role in the occurrence and development of Parkinson’s disease (PD), but the factors affecting α-syn generation and neurotoxicity remain unclear. W...

    **ao-yun Niu, **-xiu **e, Hou-zhen Tuo, Cui-** Lv, Ya-ru Huang in Cell Death Discovery (2024)

  8. Article

    Open Access

    G6PD maintains the VSMC synthetic phenotype and accelerates vascular neointimal hyperplasia by inhibiting the VDAC1–Bax-mediated mitochondrial apoptosis pathway

    Glucose-6-phosphate dehydrogenase (G6PD) plays an important role in vascular smooth muscle cell (VSMC) phenotypic switching, which is an early pathogenic event in various vascular remodeling diseases (VRDs). H...

    Ting Zhang, Rui-Jie Cao, Jiang-Ling Niu in Cellular & Molecular Biology Letters (2024)

  9. Article

    Open Access

    Karyotype and LTR-RTs analysis provide insights into oak genomic evolution

    Whole-genome duplication and long terminal repeat retrotransposons (LTR-RTs) amplification in organisms are essential factors that affect speciation, local adaptation, and diversification of organisms. Underst...

    Rui-Bin Cao, Ran Chen, Ke-**n Liao, He Li, Gang-Biao Xu, **ao-Long Jiang in BMC Genomics (2024)

  10. Article

    Open Access

    Activation of GPR81 by lactate drives tumour-induced cachexia

    Cachexia affects 50–80% of patients with cancer and accounts for 20% of cancer-related death, but the underlying mechanism driving cachexia remains elusive. Here we show that circulating lactate levels positiv...

    **dan Liu, Shi** Li, Qionghua Cui, Bu**g Guo, Wanqiu Ding, Jie Liu in Nature Metabolism (2024)

  11. Article

    Open Access

    Arnicolide D induces endoplasmic reticulum stress-mediated oncosis via ATF4 and CHOP in hepatocellular carcinoma cells

    Endoplasmic reticulum (ER) stress can trigger various cell death mechanisms beyond apoptosis, providing promise in cancer treatment. Oncosis, characterized by cellular swelling and increased membrane permeabil...

    Yu-Shan Lin, Zhiwei Sun, Li-Sha Shen, Rui-Hong Gong, Jia-Wen Chen in Cell Death Discovery (2024)

  12. Article

    Open Access

    Repositioning baloxavir marboxil as VISTA agonist that ameliorates experimental asthma

    V-type immunoglobulin domain–containing suppressor of T-cell activation (VISTA), a novel negative checkpoint regulator, plays an essential role in allergic pulmonary inflammation in mice. Treatment with a VIST...

    Jian-wen Di, Yi-xin Wang, Rui-xue Ma, Zhi-jie Luo in Cell Biology and Toxicology (2024)

  13. Article

    Open Access

    IL-8 activates fibroblasts to promote the invasion of HNSCC cells via STAT3-MMP1

    Matrix metalloproteinase-1 (MMP1) has an aberrant expression relevant to various behaviors of cancers. As dominant components of the tumor stroma, fibroblasts constitute an important source of Matrix metallopr...

    Yu Chen, Li Huang, Rui-Huan Gan, Shuo Yuan, Ting Lan, Dali Zheng in Cell Death Discovery (2024)

  14. Article

    Open Access

    TP53 to mediate immune escape in tumor microenvironment: an overview of the research progress

    Increasing evidence suggests that key cancer-causing driver genes continue to exert a sustained influence on the tumor microenvironment (TME), highlighting the importance of immunotherapeutic targeting of gene...

    Kai-li Zhu, Fei Su, **g-ru Yang, Ruo-wen **ao, Rui-yue Wu in Molecular Biology Reports (2024)

  15. Article

    Open Access

    NMDARs activation regulates endothelial ferroptosis via the PP2A-AMPK-HMGB1 axis

    N-methyl-D-aspartate receptors (NMDARs) are ligand-gated, voltage-dependent channels of the ionotropic glutamate receptor family. The present study explored whether NMDAR activation induced ferroptosis in vasc...

    Wei-Min Han, Yi-**ang Hong, Guo-Sheng **ao, Rui-Ying Wang, Gang Li in Cell Death Discovery (2024)

  16. Article

    Open Access

    Targeting the E2F1/Rb/HDAC1 axis with the small molecule HR488B effectively inhibits colorectal cancer growth

    Colorectal cancer (CRC), the third most common cancer worldwide, remains highly lethal as the disease only becomes symptomatic at an advanced stage. Growing evidence suggests that histone deacetylases (HDACs),...

    Namin Duan, **aohui Hu, Huiran Qiu, Rui Zhou, Yuru Li, Wenxia Lu in Cell Death & Disease (2023)

  17. Article

    Open Access

    PD-1 signaling negatively regulates the common cytokine receptor γ chain via MARCH5-mediated ubiquitination and degradation to suppress anti-tumor immunity

    Combination therapy with PD-1 blockade and IL-2 substantially improves anti-tumor efficacy comparing to monotherapy. The underlying mechanisms responsible for the synergistic effects of the combination therapy...

    Rui Liu, Lin-Wen Zeng, Hui-Fang Li, Jun-Ge Shi, Bo Zhong, Hong-Bing Shu in Cell Research (2023)

  18. Article

    Open Access

    RGS5 maintaining vascular homeostasis is altered by the tumor microenvironment

    Regulator of G protein signaling 5 (RGS5), as a negative regulator of G protein-coupled receptor (GPCR) signaling, is highly expressed in arterial VSMCs and pericytes, which is involved in VSMC phenotypic hete...

    Peng Kong, Xu Wang, Ya-Kun Gao, Dan-Dan Zhang, **ao-Fu Huang, Yu Song in Biology Direct (2023)

  19. Article

    Open Access

    YAP nuclear translocation induced by HIF-1α prevents DNA damage under hypoxic conditions

    Maladaptive repair of acute kidney injury (AKI) is associated with a high risk of develo** chronic kidney disease deemed irremediable even in present days. When AKI arises from ischemia-reperfusion injury, h...

    Heng-Ai Chang, Rui-Zhi Ou Yang, **g-Ming Su, Thi My Hang Nguyen in Cell Death Discovery (2023)

  20. Article

    Open Access

    MafB regulates NLRP3 inflammasome activation by sustaining p62 expression in macrophages

    Activation of the NLRP3 inflammasome is a two-step process: the priming and the activating. The priming step involves the induction of NLRP3 and pro-IL-1β, while the activating step leads to the full inflammas...

    Huachun Cui, Sami Banerjee, Na **e, Tapan Dey, Rui-Ming Liu in Communications Biology (2023)

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