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  1. Article

    Open Access

    Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies

    RNA binding proteins (RBPs) are key regulators of RNA processing and cellular function. Technologies to discover RNA targets of RBPs such as TRIBE (targets of RNA binding proteins identified by editing) and ST...

    Hugo C. Medina-Munoz, Eric Kofman, Pratibha Jagannatha in Nature Communications (2024)

  2. Article

    Open Access

    Modular affinity-labeling of the cytosine demethylation base elements in DNA

    5-methylcytosine is the most studied DNA epigenetic modification, having been linked to diverse biological processes and disease states. The elucidation of cytosine demethylation has drawn added attention the ...

    Fanny Wang, Osama K. Zahid, Uday Ghanty, Rahul M. Kohli, Adam R. Hall in Scientific Reports (2020)

  3. Article

    Open Access

    High-performance CRISPR-Cas12a genome editing for combinatorial genetic screening

    CRISPR-based genetic screening has revolutionized cancer drug target discovery, yet reliable, multiplex gene editing to reveal synergies between gene targets remains a major challenge. Here, we present a simpl...

    Rodrigo A. Gier, Krista A. Budinich, Niklaus H. Evitt in Nature Communications (2020)

  4. No Access

    Article

    A vitamin-C-derived DNA modification catalysed by an algal TET homologue

    Methylation of cytosine to 5-methylcytosine (5mC) is a prevalent DNA modification found in many organisms. Sequential oxidation of 5mC by ten-eleven translocation (TET) dioxygenases results in a cascade of add...

    Jian-Huang Xue, Guo-Dong Chen, Fuhua Hao, Hui Chen, Zhaoyuan Fang, Fang-Fang Chen in Nature (2019)

  5. No Access

    Article

    Disruption of TET2 promotes the therapeutic efficacy of CD19-targeted T cells

    Cancer immunotherapy based on genetically redirecting T cells has been used successfully to treat B cell malignancies13. In this strategy, the T cell genome is modified by integration of viral vectors or transpo...

    Joseph A. Fraietta, Christopher L. Nobles, Morgan A. Sammons, Stefan Lundh in Nature (2018)

  6. No Access

    Article

    TET enzymes, TDG and the dynamics of DNA demethylation

    DNA methylation has a profound impact on genome stability, transcription and development. Although enzymes that catalyse DNA methylation have been well characterized, those that are involved in methyl group re...

    Rahul M. Kohli, Yi Zhang in Nature (2013)

  7. No Access

    Article

    Biomimetic synthesis and optimization of cyclic peptide antibiotics

    Molecules in nature are often brought to a bioactive conformation by ring formation (macrocyclization)1. A recurrent theme in the enzymatic synthesis of macrocyclic compounds by non-ribosomal and polyketide synth...

    Rahul M. Kohli, Christopher T. Walsh, Michael D. Burkart in Nature (2002)

  8. No Access

    Article

    Peptide cyclization catalysed by the thioesterase domain of tyrocidine synthetase

    In the biosynthesis of many macrocyclic natural products by multidomain megasynthases, a carboxy-terminal thioesterase (TE) domain is involved in cyclization and product release1,2; however, it has not been deter...

    John W. Trauger, Rahul M. Kohli, Henning D. Mootz, Mohamed A. Marahiel in Nature (2000)