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  1. Article

    Open Access

    Improved cytosine base editors generated from TadA variants

    Cytosine base editors (CBEs) enable programmable genomic C·G-to-T·A transition mutations and typically comprise a modified CRISPR–Cas enzyme, a naturally occurring cytidine deaminase, and an inhibitor of uraci...

    Dieter K. Lam, Patricia R. Feliciano, Amena Arif, Tanggis Bohnuud in Nature Biotechnology (2023)

  2. No Access

    Article

    Deep learning using tumor HLA peptide mass spectrometry datasets improves neoantigen identification

    Neoantigen prediction from clinical samples is improved using a neural network model trained on a large HLA peptide and genomic tumor dataset.

    Brendan Bulik-Sullivan, Jennifer Busby, Christine D Palmer in Nature Biotechnology (2019)

  3. Article

    Open Access

    Targeted genomic landscape of metastases compared to primary tumours in clear cell metastatic renal cell carcinoma

    The genomic landscape of primary clear cell renal cell carcinoma (ccRCC) has been well described. However, little is known about cohort genomic alterations (GA) landscape in ccRCC metastases, or how it compare...

    Guillermo de Velasco, Stephanie A. Wankowicz, Russell Madison in British Journal of Cancer (2018)

  4. No Access

    Article

    The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum

    Jane Carlton and colleagues report the genome sequencing, de novo assembly and annotation of four Plasmodium vivax reference strains from diverse geographic locations. Their cross-species comparisons show that P....

    Daniel E Neafsey, Kevin Galinsky, Rays H Y Jiang, Lauren Young in Nature Genetics (2012)

  5. No Access

    Article

    Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies

    Ken Ong and colleagues report meta-analysis of 32 genome-wide association studies for age at menarche. They identify 30 loci newly associated with age at menarche, including four that were previously associate...

    Cathy E Elks, John R B Perry, Patrick Sulem, Daniel I Chasman in Nature Genetics (2010)