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  1. Article

    Open Access

    Multi-omics in nasal epithelium reveals three axes of dysregulation for asthma risk in the African Diaspora populations

    Asthma has striking disparities across ancestral groups, but the molecular underpinning of these differences is poorly understood and minimally studied. A goal of the Consortium on Asthma among African-ancestr...

    Brooke Szczesny, Meher Preethi Boorgula, Sameer Chavan in Nature Communications (2024)

  2. Article

    Author Correction: New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries

    Nick Shrine, Anna L. Guyatt, A. Mesut Erzurumluoglu, Victoria E. Jackson in Nature Genetics (2024)

  3. No Access

    Article

    Rare variant modifier analysis identifies variants in SEC24D associated with orofacial cleft subtypes

    As one of the most common structural birth defects, orofacial clefts (OFCs) have been studied for decades, and recent studies have demonstrated that there are genetic differences between the different phenotyp...

    Sarah W. Curtis, Jenna C. Carlson, Terri H. Beaty, Jeffrey C. Murray in Human Genetics (2023)

  4. Article

    Open Access

    Xanthine oxidoreductase gene polymorphisms are associated with high risk of sepsis and organ failure

    Sepsis and associated organ failures confer substantial morbidity and mortality. Xanthine oxidoreductase (XOR) is implicated in the development of tissue oxidative damage in a wide variety of respiratory and c...

    Li Gao, Nicholas Rafaels, Tanda M. Dudenkov, Mahendra Damarla in Respiratory Research (2023)

  5. Article

    Open Access

    X chromosome associations with chronic obstructive pulmonary disease and related phenotypes: an X chromosome-wide association study

    The association between genetic variants on the X chromosome to risk of COPD has not been fully explored. We hypothesize that the X chromosome harbors variants important in determining risk of COPD related phe...

    Lystra P. Hayden, Brian D. Hobbs, Robert Busch, Michael H. Cho in Respiratory Research (2023)

  6. Article

    Open Access

    Whole-genome sequencing reveals de-novo mutations associated with nonsyndromic cleft lip/palate

    The majority (85%) of nonsyndromic cleft lip with or without cleft palate (nsCL/P) cases occur sporadically, suggesting a role for de novo mutations (DNMs) in the etiology of nsCL/P. To identify high impact pr...

    Waheed Awotoye, Peter A. Mossey, Jacqueline B. Hetmanski in Scientific Reports (2022)

  7. Article

    Open Access

    Whole genome sequencing of orofacial cleft trios from the Gabriella Miller Kids First Pediatric Research Consortium identifies a new locus on chromosome 21

    Orofacial clefts (OFCs) are among the most prevalent craniofacial birth defects worldwide and create a significant public health burden. The majority of OFCs are non-syndromic, and the genetic etiology of non-...

    Nandita Mukhopadhyay, Madison Bishop, Michael Mortillo, Pankaj Chopra in Human Genetics (2020)

  8. Article

    Open Access

    Author Correction: Association study in African-admixed populations across the Americas recapitulates asthma risk loci in non-African populations

    An amendment to this paper has been published and can be accessed via a link at the top of the paper.

    Michelle Daya, Nicholas Rafaels, Tonya M. Brunetti, Sameer Chavan in Nature Communications (2019)

  9. Article

    Open Access

    Replicated methylation changes associated with eczema herpeticum and allergic response

    Although epigenetic mechanisms are important risk factors for allergic disease, few studies have evaluated DNA methylation differences associated with atopic dermatitis (AD), and none has focused on AD with ec...

    Meher Preethi Boorgula, Margaret A. Taub, Nicholas Rafaels in Clinical Epigenetics (2019)

  10. Article

    Open Access

    DSP variants may be associated with longitudinal change in quantitative emphysema

    Emphysema, characterized by lung destruction, is a key component of Chronic Obstructive Pulmonary Disease (COPD) and is associated with increased morbidity and mortality. Genome-wide association studies (GWAS)...

    Woori Kim, Michael H. Cho, Phuwanat Sakornsakolpat, David A. Lynch in Respiratory Research (2019)

  11. Article

    Author Correction: New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries

    An amendment to this paper has been published and can be accessed via a link at the top of the paper

    Nick Shrine, Anna L. Guyatt, A. Mesut Erzurumluoglu, Victoria E. Jackson in Nature Genetics (2019)

  12. No Access

    Article

    New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries

    Reduced lung function predicts mortality and is key to the diagnosis of chronic obstructive pulmonary disease (COPD). In a genome-wide association study in 400,102 individuals of European ancestry, we define 2...

    Nick Shrine, Anna L. Guyatt, A. Mesut Erzurumluoglu, Victoria E. Jackson in Nature Genetics (2019)

  13. No Access

    Article

    Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations

    Chronic obstructive pulmonary disease (COPD) is the leading cause of respiratory mortality worldwide. Genetic risk loci provide new insights into disease pathogenesis. We performed a genome-wide association st...

    Phuwanat Sakornsakolpat, Dmitry Prokopenko, Maxime Lamontagne in Nature Genetics (2019)

  14. Article

    Open Access

    Association study in African-admixed populations across the Americas recapitulates asthma risk loci in non-African populations

    Asthma is a complex disease with striking disparities across racial and ethnic groups. Despite its relatively high burden, representation of individuals of African ancestry in asthma genome-wide association st...

    Michelle Daya, Nicholas Rafaels, Tonya M. Brunetti, Sameer Chavan in Nature Communications (2019)

  15. Article

    Author Correction: Assembly of a pan-genome from deep sequencing of 910 humans of African descent

    In the version of this article initially published, the statement “there are no pan-genomes for any other animal or plant species” was incorrect. The statement has been corrected to “there are no reported pan-...

    Rachel M. Sherman, Juliet Forman, Valentin Antonescu, Daniela Puiu in Nature Genetics (2019)

  16. Article

    Open Access

    Assembly of a pan-genome from deep sequencing of 910 humans of African descent

    We used a deeply sequenced dataset of 910 individuals, all of African descent, to construct a set of DNA sequences that is present in these individuals but missing from the reference human genome. We aligned 1...

    Rachel M. Sherman, Juliet Forman, Valentin Antonescu, Daniela Puiu in Nature Genetics (2019)

  17. No Access

    Article

    Genomics and response to long-term oxygen therapy in chronic obstructive pulmonary disease

    Chronic obstructive pulmonary disease (COPD) is a leading cause of death worldwide, and long-term oxygen therapy has been shown to reduce mortality in COPD patients with severe hypoxemia. However, the Long-ter...

    Minseok Seo, Weiliang Qiu, William Bailey in Journal of Molecular Medicine (2018)

  18. Article

    Open Access

    Childhood asthma is associated with COPD and known asthma variants in COPDGene: a genome-wide association study

    Childhood asthma is strongly influenced by genetics and is a risk factor for reduced lung function and chronic obstructive pulmonary disease (COPD) in adults. This study investigates self-reported childhood as...

    Lystra P. Hayden, Michael H. Cho, Benjamin A. Raby, Terri H. Beaty in Respiratory Research (2018)

  19. Article

    Open Access

    Integration of Molecular Interactome and Targeted Interaction Analysis to Identify a COPD Disease Network Module

    The polygenic nature of complex diseases offers potential opportunities to utilize network-based approaches that leverage the comprehensive set of protein-protein interactions (the human interactome) to identi...

    Amitabh Sharma, Maksim Kitsak, Michael H. Cho, Asher Ameli in Scientific Reports (2018)

  20. Article

    Open Access

    The genetics of smoking in individuals with chronic obstructive pulmonary disease

    Smoking is the principal modifiable environmental risk factor for chronic obstructive pulmonary disease (COPD) which affects 300 million people and is the 3rd leading cause of death worldwide. Most of the gene...

    Ma’en Obeidat, Guohai Zhou, Xuan Li, Nadia N. Hansel in Respiratory Research (2018)

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