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  1. Article

    Open Access

    An integrated single cell and spatial transcriptomic map of human white adipose tissue

    To date, single-cell studies of human white adipose tissue (WAT) have been based on small cohort sizes and no cellular consensus nomenclature exists. Herein, we performed a comprehensive meta-analysis of publi...

    Lucas Massier, Jutta Jalkanen, Merve Elmastas, Jiawei Zhong in Nature Communications (2023)

  2. Article

    Open Access

    Integrated single cell and spatial transcriptomics reveal autoreactive differentiated B cells in joints of early rheumatoid arthritis

    B cells play a significant role in established Rheumatoid Arthritis (RA). However, it is unclear to what extent differentiated B cells are present in joint tissue already at the onset of disease. Here, we stud...

    Uta Hardt, Konstantin Carlberg, Erik af Klint, Peter Sahlström in Scientific Reports (2022)

  3. Article

    Open Access

    Exploring inflammatory signatures in arthritic joint biopsies with Spatial Transcriptomics

    Lately it has become possible to analyze transcriptomic profiles in tissue sections with retained cellular context. We aimed to explore synovial biopsies from rheumatoid arthritis (RA) and spondyloarthritis (S...

    Konstantin Carlberg, Marina Korotkova, Ludvig Larsson in Scientific Reports (2019)

  4. Article

    Open Access

    Spatial detection of fetal marker genes expressed at low level in adult human heart tissue

    Heart failure is a major health problem linked to poor quality of life and high mortality rates. Hence, novel biomarkers, such as fetal marker genes with low expression levels, could potentially differentiate ...

    Michaela Asp, Fredrik Salmén, Patrik L. Ståhl, Sanja Vickovic in Scientific Reports (2017)

  5. Article

    Open Access

    Correction: Corrigendum: An automated approach to prepare tissue-derived spatially barcoded RNA-sequencing libraries

    Scientific Reports 6: Article number: 37137; published online: 16 November 2016; updated: 13 March 2017 This Article contains errors in Figure 6c. The Pearson correlation values for the automated and manually ...

    Anders Jemt, Fredrik Salmén, Anna Lundmark, Annelie Mollbrink in Scientific Reports (2017)

  6. Article

    Open Access

    An automated approach to prepare tissue-derived spatially barcoded RNA-sequencing libraries

    Sequencing the nucleic acid content of individual cells or specific biological samples is becoming increasingly common. This drives the need for robust, scalable and automated library preparation protocols. Fu...

    Anders Jemt, Fredrik Salmén, Anna Lundmark, Annelie Mollbrink in Scientific Reports (2016)

  7. Article

    Open Access

    Massive and parallel expression profiling using microarrayed single-cell sequencing

    Single-cell transcriptome analysis overcomes problems inherently associated with averaging gene expression measurements in bulk analysis. However, single-cell analysis is currently challenging in terms of cost...

    Sanja Vickovic, Patrik L. Ståhl, Fredrik Salmén in Nature Communications (2016)