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  1. Article

    Open Access

    Integration of whole genome sequencing into a healthcare setting: high diagnostic rates across multiple clinical entities in 3219 rare disease patients

    We report the findings from 4437 individuals (3219 patients and 1218 relatives) who have been analyzed by whole genome sequencing (WGS) at the Genomic Medicine Center Karolinska-Rare Diseases (GMCK-RD) since m...

    Henrik Stranneheim, Kristina Lagerstedt-Robinson, Måns Magnusson in Genome Medicine (2021)

  2. Article

    Open Access

    Automation of Spatial Transcriptomics library preparation to enable rapid and robust insights into spatial organization of tissues

    Interest in studying the spatial distribution of gene expression in tissues is rapidly increasing. Spatial Transcriptomics is a novel sequencing-based technology that generates high-throughput information on t...

    Emelie Berglund, Sami Saarenpää, Anders Jemt, Joel Gruselius in BMC Genomics (2020)

  3. Article

    Open Access

    Gene expression profiling of periodontitis-affected gingival tissue by spatial transcriptomics

    Periodontitis is a highly prevalent chronic inflammatory disease of the periodontium, leading ultimately to tooth loss. In order to characterize the gene expression of periodontitis-affected gingival tissue, w...

    Anna Lundmark, Natalija Gerasimcik, Tove Båge, Anders Jemt in Scientific Reports (2018)

  4. Article

    Open Access

    Correction: Corrigendum: An automated approach to prepare tissue-derived spatially barcoded RNA-sequencing libraries

    Scientific Reports 6: Article number: 37137; published online: 16 November 2016; updated: 13 March 2017 This Article contains errors in Figure 6c. The Pearson correlation values for the automated and manually ...

    Anders Jemt, Fredrik Salmén, Anna Lundmark, Annelie Mollbrink in Scientific Reports (2017)

  5. Article

    Open Access

    An automated approach to prepare tissue-derived spatially barcoded RNA-sequencing libraries

    Sequencing the nucleic acid content of individual cells or specific biological samples is becoming increasingly common. This drives the need for robust, scalable and automated library preparation protocols. Fu...

    Anders Jemt, Fredrik Salmén, Anna Lundmark, Annelie Mollbrink in Scientific Reports (2016)