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    Article

    Identification of early neurodegenerative pathways in progressive multiple sclerosis

    Progressive multiple sclerosis (MS) is characterized by unrelenting neurodegeneration, which causes cumulative disability and is refractory to current treatments. Drug development to prevent disease progressio...

    Max Kaufmann, Anna-Lena Schaupp, Rosa Sun, Fabian Coscia in Nature Neuroscience (2022)

  2. Article

    Open Access

    Single-cell and spatial transcriptomics enables probabilistic inference of cell type topography

    The field of spatial transcriptomics is rapidly expanding, and with it the repertoire of available technologies. However, several of the transcriptome-wide spatial assays do not operate on a single cell level,...

    Alma Andersson, Joseph Bergenstråhle, Michaela Asp in Communications Biology (2020)

  3. Article

    Open Access

    Identification and transfer of spatial transcriptomics signatures for cancer diagnosis

    Distinguishing ductal carcinoma in situ (DCIS) from invasive ductal carcinoma (IDC) regions in clinical biopsies constitutes a diagnostic challenge. Spatial transcriptomics (ST) is an in situ capturing method,...

    Niyaz Yoosuf, José Fernández Navarro, Fredrik Salmén in Breast Cancer Research (2020)

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    Article

    Barcoded solid-phase RNA capture for Spatial Transcriptomics profiling in mammalian tissue sections

    Spatial resolution of gene expression enables gene expression events to be pinpointed to a specific location in biological tissue. Spatially resolved gene expression in tissue sections is traditionally analyze...

    Fredrik Salmén, Patrik L. Ståhl, Annelie Mollbrink in Nature Protocols (2018)

  5. Article

    Open Access

    Correction: Corrigendum: An automated approach to prepare tissue-derived spatially barcoded RNA-sequencing libraries

    Scientific Reports 6: Article number: 37137; published online: 16 November 2016; updated: 13 March 2017 This Article contains errors in Figure 6c. The Pearson correlation values for the automated and manually ...

    Anders Jemt, Fredrik Salmén, Anna Lundmark, Annelie Mollbrink in Scientific Reports (2017)

  6. Article

    Open Access

    An automated approach to prepare tissue-derived spatially barcoded RNA-sequencing libraries

    Sequencing the nucleic acid content of individual cells or specific biological samples is becoming increasingly common. This drives the need for robust, scalable and automated library preparation protocols. Fu...

    Anders Jemt, Fredrik Salmén, Anna Lundmark, Annelie Mollbrink in Scientific Reports (2016)

  7. Article

    Open Access

    Massive and parallel expression profiling using microarrayed single-cell sequencing

    Single-cell transcriptome analysis overcomes problems inherently associated with averaging gene expression measurements in bulk analysis. However, single-cell analysis is currently challenging in terms of cost...

    Sanja Vickovic, Patrik L. Ståhl, Fredrik Salmén in Nature Communications (2016)