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  1. Article

    Open Access

    Differences in regional brain structure in toddlers with autism are related to future language outcomes

    Language and social symptoms improve with age in some autistic toddlers, but not in others, and such outcome differences are not clearly predictable from clinical scores alone. Here we aim to identify early-ag...

    Kuaikuai Duan, Lisa Eyler, Karen Pierce, Michael V. Lombardo in Nature Communications (2024)

  2. Article

    Open Access

    Embryonic origin of two ASD subtypes of social symptom severity: the larger the brain cortical organoid size, the more severe the social symptoms

    Social affective and communication symptoms are central to autism spectrum disorder (ASD), yet their severity differs across toddlers: Some toddlers with ASD display improving abilities across early ages and d...

    Eric Courchesne, Vani Taluja, Sanaz Nazari, Caitlin M. Aamodt in Molecular Autism (2024)

  3. Article

    Open Access

    Functional connectivity of the human face network exhibits right hemispheric lateralization from infancy to adulthood

    Adults typically exhibit right hemispheric dominance in the processing of faces. In this cross-sectional study, we investigated age-dependent changes in face processing lateralization from infancy to adulthood...

    Keren Lesinger, Gideon Rosenthal, Karen Pierce, Eric Courchesne in Scientific Reports (2023)

  4. Article

    Open Access

    Prognostic early snapshot stratification of autism based on adaptive functioning

    A major goal of precision medicine is to predict prognosis based on individualized information at the earliest possible points in development. Using early snapshots of adaptive functioning and unsupervised dat...

    Veronica Mandelli, Isotta Landi, Elena Maria Busuoli in Nature Mental Health (2023)

  5. Article

    Open Access

    Atypical functional connectivity of temporal cortex with precuneus and visual regions may be an early-age signature of ASD

    Social and language abilities are closely intertwined during early typical development. In autism spectrum disorder (ASD), however, deficits in social and language development are early-age core symptoms. We p...

    Yaqiong **ao, Teresa H. Wen, Lauren Kupis, Lisa T. Eyler, Vani Taluja in Molecular Autism (2023)

  6. Article

    Open Access

    A predictive ensemble classifier for the gene expression diagnosis of ASD at ages 1 to 4 years

    Autism Spectrum Disorder (ASD) diagnosis remains behavior-based and the median age of diagnosis is ~52 months, nearly 5 years after its first-trimester origin. Accurate and clinically-translatable early-age di...

    Bokan Bao, Javad Zahiri, Vahid H. Gazestani, Linda Lopez in Molecular Psychiatry (2023)

  7. No Access

    Article

    A phenotypic spectrum of autism is attributable to the combined effects of rare variants, polygenic risk and sex

    The genetic etiology of autism spectrum disorder (ASD) is multifactorial, but how combinations of genetic factors determine risk is unclear. In a large family sample, we show that genetic loads of rare and pol...

    Danny Antaki, James Guevara, Adam X. Maihofer, Marieke Klein in Nature Genetics (2022)

  8. Article

    Publisher Correction: A phenotypic spectrum of autism is attributable to the combined effects of rare variants, polygenic risk and sex

    Danny Antaki, James Guevara, Adam X. Maihofer, Marieke Klein in Nature Genetics (2022)

  9. Article

    Open Access

    Large scale validation of an early-age eye-tracking biomarker of an autism spectrum disorder subtype

    Few clinically validated biomarkers of ASD exist which can rapidly, accurately, and objectively identify autism during the first years of life and be used to support optimized treatment outcomes and advances i...

    Teresa H. Wen, Amanda Cheng, Charlene Andreason, Javad Zahiri in Scientific Reports (2022)

  10. No Access

    Article

    Neural responses to affective speech, including motherese, map onto clinical and social eye tracking profiles in toddlers with ASD

    Affective speech, including motherese, captures an infant’s attention and enhances social, language and emotional development. Decreased behavioural response to affective speech and reduced caregiver–child int...

    Yaqiong **ao, Teresa H. Wen, Lauren Kupis, Lisa T. Eyler in Nature Human Behaviour (2022)

  11. Article

    Open Access

    Pre-treatment clinical and gene expression patterns predict developmental change in early intervention in autism

    Early detection and intervention are believed to be key to facilitating better outcomes in children with autism, yet the impact of age at treatment start on the outcome is poorly understood. While clinical tra...

    Michael V. Lombardo, Elena Maria Busuoli, Laura Schreibman in Molecular Psychiatry (2021)

  12. Article

    Open Access

    Multiple freeze-thaw cycles lead to a loss of consistency in poly(A)-enriched RNA sequencing

    Both RNA-Seq and sample freeze-thaw are ubiquitous. However, knowledge about the impact of freeze-thaw on downstream analyses is limited. The lack of common quality metrics that are sufficiently sensitive to f...

    Benjamin P. Kellman, Hratch M. Baghdassarian, Tiziano Pramparo in BMC Genomics (2021)

  13. Article

    Open Access

    Author Correction: Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders

    An amendment to this paper has been published and can be accessed via a link at the top of the paper.

    Tianyun Wang, Kendra Hoekzema, Davide Vecchio, Huidan Wu in Nature Communications (2020)

  14. Article

    Open Access

    Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders

    Most genes associated with neurodevelopmental disorders (NDDs) were identified with an excess of de novo mutations (DNMs) but the significance in case–control mutation burden analysis is unestablished. Here, w...

    Tianyun Wang, Kendra Hoekzema, Davide Vecchio, Huidan Wu in Nature Communications (2020)

  15. No Access

    Article

    A perturbed gene network containing PI3K–AKT, RAS–ERK and WNT–β-catenin pathways in leukocytes is linked to ASD genetics and symptom severity

    Hundreds of genes are implicated in autism spectrum disorder (ASD), but the mechanisms through which they contribute to ASD pathophysiology remain elusive. Here we analyzed leukocyte transcriptomics from 1- to...

    Vahid H. Gazestani, Tiziano Pramparo, Srinivasa Nalabolu in Nature Neuroscience (2019)

  16. Article

    Open Access

    The ASD Living Biology: from cell proliferation to clinical phenotype

    Autism spectrum disorder (ASD) has captured the attention of scientists, clinicians and the lay public because of its uncertain origins and striking and unexplained clinical heterogeneity. Here we review genet...

    Eric Courchesne, Tiziano Pramparo, Vahid H. Gazestani in Molecular Psychiatry (2019)

  17. No Access

    Article

    Large-scale associations between the leukocyte transcriptome and BOLD responses to speech differ in autism early language outcome subtypes

    Heterogeneity in early language development in autism spectrum disorder (ASD) is clinically important and may reflect neurobiologically distinct subtypes. Here, we identified a large-scale association between ...

    Michael V. Lombardo, Tiziano Pramparo, Vahid Gazestani in Nature Neuroscience (2018)

  18. Article

    Open Access

    The geometric preference subtype in ASD: identifying a consistent, early-emerging phenomenon through eye tracking

    The wide range of ability and disability in ASD creates a need for tools that parse the phenotypic heterogeneity into meaningful subtypes. Using eye tracking, our past studies revealed that when presented with...

    Adrienne Moore, Madeline Wozniak, Andrew Yousef, Cindy Carter Barnes in Molecular Autism (2018)

  19. No Access

    Article

    Hotspots of missense mutation identify neurodevelopmental disorder genes and functional domains

    This study characterizes the properties of disease-causing mutations that produce sporadic amino acid replacements in proteins of people with autism and developmental delay. The mutations tend to cluster and r...

    Madeleine R Geisheker, Gabriel Heymann, Tianyun Wang, Bradley P Coe in Nature Neuroscience (2017)

  20. Article

    Open Access

    Hierarchical cortical transcriptome disorganization in autism

    Autism spectrum disorders (ASD) are etiologically heterogeneous and complex. Functional genomics work has begun to identify a diverse array of dysregulated transcriptomic programs (e.g., synaptic, immune, cell...

    Michael V. Lombardo, Eric Courchesne, Nathan E. Lewis, Tiziano Pramparo in Molecular Autism (2017)

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