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Allelic variation in the autotetraploid potato: genes involved in starch and steroidal glycoalkaloid metabolism as a case study
BackgroundTuber starch and steroidal glycoalkaloid (SGA)-related traits have been consistently prioritized in potato breeding, while allelic...
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Unlocking allelic variation in circadian clock genes to develop environmentally robust and productive crops
Main conclusionMolecular mechanisms of biological rhythms provide opportunities to harness functional allelic diversity in core (and trait- or...
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Allelic variation in major genes and quantitative trait loci associated with grain number in historical spring wheat cultivars
Wheat grain yield is a complex polygenic trait influenced by variation in several components, particularly number of grains per unit area and grain...
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Allelic variation in Puroindoline genes in synthetic hexaploid wheats and development of allele-specific PCR markers for new soft-texture alleles
Grain hardness is an important end-use quality trait which can significantly affect milling and processing quality of wheat. It is controlled by...
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Allelic variation and genetic diversity of low-molecular-weight glutenin subunit- and α/β-gliadin encoding genes in tetraploid wheat
Allelic variations in storage-protein genes play a significant role in determining the properties of wheat flour. This study aimed to investigate...
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Targeted Identification of Rice Grain-Associated Gene Allelic Variation Through Mutation Induction, Targeted Sequencing, and Whole Genome Sequencing Combined with a Mixed-Samples Strategy
BackgroundThe mining of new allelic variation and the induction of new genetic variability are the basis for improving breeding efficiency.
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The expression characteristics and allelic variation of AnVromindoline-1/3 in Avena nuda L.
Oat is a worldwide cultivated crop with nutritional, ecological and economic value. The hardness of oat is closely related to the damage to the grain...
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Allelic to genome wide perspectives of swine genetic variation to litter size and its component traits
Litter size is a complex and sex limited trait that depends on various biological, managemental and environmental factors. Owing to its low...
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Constructing founder sets under allelic and non-allelic homologous recombination
Homologous recombination between the maternal and paternal copies of a chromosome is a key mechanism for human inheritance and shapes population...
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Natural allelic variation in the EamA-like transporter, CmSN, is associated with fruit skin netting in melon
Key messageA SNP mutation in CmSN , encoding an EamA-like transporter, is responsible for fruit skin netting in melon.
AbstractIn maturing melon ( Cuc...
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SEESAW: detecting isoform-level allelic imbalance accounting for inferential uncertainty
Detecting allelic imbalance at the isoform level requires accounting for inferential uncertainty, caused by multi-map** of RNA-seq reads. Our...
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Relationship between allelic variation at the Glu-3 loci and qualitative traits in bread wheat
Low molecular weight glutenin subunits (LMW-GS), significantly influence the end-use quality of flour. In this study, a total of 63 Iranian bread...
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Natural allelic variation confers high resistance to sweet potato weevils in sweet potato
Sweet potato ( Ipomoea batatas L.) is a major root crop worldwide. Sweet potato weevils (SPWs) pose one of the most significant challenges to sweet...
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Substitution Map** and Allelic Variations of the Domestication Genes from O. rufipogon and O. nivara
BackgroundDomestication from wild rice species to cultivated rice is a key milestone, which involved changes of many specific traits and the...
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Allelic variation and haplotype diversity of Matrilineal (MTL) gene governing in vivo maternal haploid induction in maize
Diverse haploid inducer lines with > 6% of haploid induction rate are now routinely used to develop doubled haploid lines. Though MTL gene regulates...
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Molecular profiling of BADH2 locus reveals distinct functional allelic polymorphism associated with fragrance variation in Indian aromatic rice germplasm
Allelic variability of the aroma gene, betaine aldehyde dehydrogenase 2 ( BADH2 ) was studied in a random subset of indigenous aromatic rice germplasm...
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Allelic and genotypic frequencies of SNP related to beef and carcass quality in Romosinuano cattle in Mexico
Romosinuano is a tropically adapted Bos taurus breed, and some Mexican breeders aim to improve it genetically. The aim was to estimate allelic and...
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Allelic variation for alpha-Glucan Water Dikinase is associated with starch phosphate content in tetraploid potato
Key messageAssociation analysis resulted in the identification of specific StGWD alleles causing either an increase or decrease in starch phosphate...
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High functional allelic diversity and copy number in both MHC classes in the common buzzard
BackgroundThe major histocompatibility complex (MHC), which encodes molecules that recognize various pathogens and parasites and initiates the...
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Dehydrin genes allelic variations in some genotypes of local wild and cultivated barley (Hordeum L.) in Syria
Molecular research was carried out on a group of wild barley species ( Hordeum spontaneum, H. bulbosum ) from four governorates (Damascus, Damascus...
