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  1. nRCFV: a new, dataset-size-independent metric to quantify compositional heterogeneity in nucleotide and amino acid datasets

    Motivation

    Compositional heterogeneity—when the proportions of nucleotides and amino acids are not broadly similar across the dataset—is a cause of a...

    James F. Fleming, Torsten H. Struck in BMC Bioinformatics
    Article Open access 12 April 2023
  2. Modelling dataset bias in machine-learned theories of economic decision-making

    Normative and descriptive models have long vied to explain and predict human risky choices, such as those between goods or gambles. A recent study...

    Tobias Thomas, Dominik Straub, ... Constantin A. Rothkopf in Nature Human Behaviour
    Article Open access 12 January 2024
  3. A multi-tissue gene expression dataset for hibernating brown bears

    Objectives

    Complex physiological adaptations often involve the coordination of molecular responses across multiple tissues. Establishing...

    Blair W. Perry, Michael W. Saxton, ... Omar E. Cornejo in BMC Genomic Data
    Article Open access 08 June 2023
  4. Transformative Deep Neural Network Approaches in Kidney Ultrasound Segmentation: Empirical Validation with an Annotated Dataset

    Kidney ultrasound (US) images are primarily employed for diagnosing different renal diseases. Among them, one is renal localization and detection,...

    Rashid Khan, Chuda **ao, ... Bingding Huang in Interdisciplinary Sciences: Computational Life Sciences
    Article 27 February 2024
  5. Patterns in Body Size

    We discuss several patterns and processes related to body size variation in this chapter. Body size is one of the most important macroecological...
    José Alexandre Felizola Diniz-Filho in The Macroecological Perspective
    Chapter 2023
  6. SpikeBALL: Neuromorphic Dataset for Object Tracking

    Most of widely used datasets are not suitable for Spiking Neural Networks (SNNs) due to the need to encode the static data into spike trains and then...
    Maria P. Guerrero-Lebrero, Fernando M. Quintana, Elisa Guerrero in Advances in Computational Intelligence
    Conference paper 2023
  7. Deep Learning for Parkinson’s Disease Severity Stage Prediction Using a New Dataset

    Parkinson’s Disease (PD) is a progressive neurological disorder affecting the Basal Ganglia (BG) region in the mid-brain producing degeneration of...
    Zainab Maalej, Fahmi Ben Rejab, Kaouther Nouira in Bioinformatics and Biomedical Engineering
    Conference paper 2023
  8. Existing dataset suggests lakes in agricultural watersheds are warming faster than urban or forested lakes

    Lake temperatures are important drivers of ecological and ecosystem processes, including influencing organism physiology and biogeochemical rates....

    Patrick T. Kelly, Kathleen Cutting, ... Edward Pope in Aquatic Sciences
    Article 17 June 2024
  9. TBGA: a large-scale Gene-Disease Association dataset for Biomedical Relation Extraction

    Background

    Databases are fundamental to advance biomedical science. However, most of them are populated and updated with a great deal of human effort....

    Stefano Marchesin, Gianmaria Silvello in BMC Bioinformatics
    Article Open access 31 March 2022
  10. ddRAD-seq generated genomic SNP dataset of Central and Southeast European Turkey oak (Quercus cerris L.) populations

    Turkey oak ( Quercus cerris L.) is one of the most ecologically and economically significant deciduous tree species in the Central and Southeast...

    Botond B. Lados, Klára Cseke, ... Endre Gy. Tóth in Genetic Resources and Crop Evolution
    Article Open access 31 January 2024
  11. Measurement model: a generic model for size measurement of aquatic products using instance segmentation

    In aquaculture, aquatic product size is an important indicator of the condition of aquatic products, but the current aquatic product size measurement...

    Zhiqian He, Lijie Cao, ... Jialu Luo in Aquaculture International
    Article 11 September 2023
  12. The gut microbiome-metabolome dataset collection: a curated resource for integrative meta-analysis

    Integrative analysis of microbiome and metabolome data obtained from human fecal samples is a promising avenue for better understanding the interplay...

    Efrat Muller, Yadid M. Algavi, Elhanan Borenstein in npj Biofilms and Microbiomes
    Article Open access 15 October 2022
  13. Machine vision-based estimation of body size and weight of pearl gentian grouper

    Monitoring and evaluating fish growth and health relies on accurate aquaculture body size and weight data. Pearl’s gentian grouper has tender flesh...

    Xueqi Cong, Yunchen Tian, ... Ruipeng Li in Aquaculture International
    Article 24 February 2024
  14. Sample size determination for training set optimization in genomic prediction

    Key message

    A practical approach is developed to determine a cost-effective optimal training set for selective phenoty** in a genomic prediction...

    Po-Ya Wu, Jen-Hsiang Ou, Chen-Tuo Liao in Theoretical and Applied Genetics
    Article Open access 13 March 2023
  15. Clutch size but not egg size associates with migration distance in South American land birds

    The association between migratory strategies and life-history traits helps explain how migratory organisms balance the energetic costs and survival...

    Nadinni Oliveira de Matos Sousa, Neander Marcel Heming, Miguel Ângelo Marini in Journal of Ornithology
    Article 25 June 2024
  16. Evaluation of a decided sample size in machine learning applications

    Background

    An appropriate sample size is essential for obtaining a precise and reliable outcome of a study. In machine learning (ML), studies with...

    Daniyal Rajput, Wei-Jen Wang, Chun-Chuan Chen in BMC Bioinformatics
    Article Open access 14 February 2023
  17. Understanding the influence of tree size distribution on the CTL harvesting productivity of two different size harvesting machines

    Tree size is one of the major factors that determines harvester productivity and is heavily influenced by forest managerial activities. Stand...

    Simon Ackerman, James Bekker, ... Bruce Talbot in European Journal of Forest Research
    Article Open access 13 April 2024
  18. A high-performance computational workflow to accelerate GATK SNP detection across a 25-genome dataset

    Background

    Single-nucleotide polymorphisms (SNPs) are the most widely used form of molecular genetic variation studies. As reference genomes and...

    Yong Zhou, Nagarajan Kathiresan, ... Rod A. Wing in BMC Biology
    Article Open access 25 January 2024
  19. Large-scale omics dataset of polymer degradation provides robust interpretation for microbial niche and succession on different plastisphere

    While biodegradable polymers have received increased attention due to the recent marine plastic problem, few studies have compared microbiomes and...

    Daiki Yokoyama, Ayari Takamura, ... Jun Kikuchi in ISME Communications
    Article Open access 03 July 2023
  20. Prey size spectra and predator to prey size ratios of southern ocean salps

    Salp grazing is important in sha** planktonic food-web structure. However, little is known about the size ranges of their prey in the field or how...

    Christian K. Fender, Moira Décima, ... Michael R. Stukel in Marine Biology
    Article 08 March 2023
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