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  1. Article

    Open Access

    Correction to: Similarities and differences between variants called with human reference genome HG19 or HG38

    After publication of this supplement article

    Bohu Pan, Rebecca Kusko, Wenming **ao, Yuanting Zheng, Zhichao Liu in BMC Bioinformatics (2019)

  2. Article

    Open Access

    Similarities and differences between variants called with human reference genome HG19 or HG38

    Reference genome selection is a prerequisite for successful analysis of next generation sequencing (NGS) data. Current practice employs one of the two most recent human reference genome versions: HG19 or HG38....

    Bohu Pan, Rebecca Kusko, Wenming **ao, Yuanting Zheng, Zhichao Liu in BMC Bioinformatics (2019)

  3. No Access

    Chapter

    Applications of Molecular Dynamics Simulations in Computational Toxicology

    is a discipline seeking to computationally and predict toxicity of chemicals including drugs, food additives, and other . of chemicals using current or is at best time-consuming and expensive. ...

    Sugunadevi Sakkiah, Rebecca Kusko, Weida Tong in Advances in Computational Toxicology (2019)

  4. No Access

    Article

    Discovery of potent inhibitors for interleukin-2-inducible T-cell kinase: structure-based virtual screening and molecular dynamics simulation approaches

    In our study, a structure-based virtual screening study was conducted to identify potent ITK inhibitors, as ITK is considered to play an important role in the treatment of inflammatory diseases. We developed a...

    Chandrasekaran Meganathan, Sugunadevi Sakkiah, Yuno Lee in Journal of Molecular Modeling (2013)

  5. No Access

    Article

    Pharmacophore modeling, molecular docking, and molecular dynamics simulation approaches for identifying new lead compounds for inhibiting aldose reductase 2

    Aldose reductase 2 (ALR2), which catalyzes the reduction of glucose to sorbitol using NADP as a cofactor, has been implicated in the etiology of secondary complications of diabetes. A pharmacophore model, Hypo...

    Sugunadevi Sakkiah, Sundarapandian Thangapandian in Journal of Molecular Modeling (2012)

  6. No Access

    Article

    Homology modeling, molecular dynamics, e-pharmacophore map** and docking study of Chikungunya virus nsP2 protease

    To date, no suitable vaccine or specific antiviral drug is available to treat Chikungunya viral (CHIKV) fever. Hence, it is essential to identify drug candidates that could potentially impede CHIKV infection. ...

    Kh. Dhanachandra Singh, Palani Kirubakaran in Journal of Molecular Modeling (2012)

  7. Article

    Open Access

    Potent bace-1 inhibitor design using pharmacophore modeling, in silico screening and molecular docking studies

    Beta-site amyloid precursor protein cleaving enzyme (BACE-1) is a single-membrane protein belongs to the aspartyl protease class of catabolic enzymes. This enzyme involved in the processing of the amyloid prec...

    Shalini John, Sundarapandian Thangapandian, Sugunadevi Sakkiah in BMC Bioinformatics (2011)