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    Pharmacophore modeling, 3D-QSAR, and molecular docking study on naphthyridine derivatives as inhibitors of 3-phosphoinositide-dependent protein kinase-1

    The 3-phosphoinositide-dependent protein kinase-1 (PDK1) is an imminent target for discovering novel anticancer drugs. In order to understand the structure–activity correlation of naphthyridine-based PDK-1 inh...

    Palani Kirubakaran, Karthikeyan Muthusamy in Medicinal Chemistry Research (2013)

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    In silico structural and functional analysis of the human TOPK protein by structure modeling and molecular dynamics studies

    Over expression of T-lymphokine–activated killer cell–originated protein kinase (TOPK) has been associated with leukemia, myeloma tumors and various other cancers. The function and regulatory mechanism of TOPK...

    Palani Kirubakaran, Muthusamy Karthikeyan in Journal of Molecular Modeling (2013)

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    Theoretical studies on benzimidazole derivatives as E. coli biotin carboxylase inhibitors

    Biotin carboxylase (AccC) protein plays an essential role in cell wall biosynthesis in majority of bacterial genera. Inhibition of cell wall biosynthesis might be an ideal way to control the bacterial multipli...

    Selvaraman Nagamani, Karthikeyan Muthusamy in Medicinal Chemistry Research (2012)

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    Homology modeling, molecular dynamics, and molecular docking studies of Trichomonas vaginalis carbamate kinase

    Carbamate kinase catalyzes the reversible reaction of carbamoyl phosphate, ADP to ATP and ammonium phosphate which is then hydrolyzed to ammonia and carbonate. In this study, the three-dimensional model of TvC...

    Palani Kirubakaran, Karthikeyan Muthusamy in Medicinal Chemistry Research (2012)

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    Docking Studies of Adenosine Analogues with NS5 Methyltransferase of Yellow Fever Virus

    Yellow fever virus (YFV) is caused by single stranded positive RNA virus called Flavivirus. Till now no specific antiviral agents are available for the treatment of YFV, and despite a commercial YFV vaccine, ther...

    Kh. Dhanachandra Singh, Palani Kirubakaran in Indian Journal of Microbiology (2012)

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    Homology modeling, molecular dynamics, e-pharmacophore map** and docking study of Chikungunya virus nsP2 protease

    To date, no suitable vaccine or specific antiviral drug is available to treat Chikungunya viral (CHIKV) fever. Hence, it is essential to identify drug candidates that could potentially impede CHIKV infection. ...

    Kh. Dhanachandra Singh, Palani Kirubakaran in Journal of Molecular Modeling (2012)