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  1. Article

    Publisher Correction to: Morphological Features of Language Regions in Individuals with Tuberous Sclerosis Complex

    Banu Ahtam, Hyuk ** Yun, Rutvi Vyas in Journal of Autism and Developmental Disord… (2024)

  2. Article

    Open Access

    SlicerCBM: automatic framework for biomechanical analysis of the brain

    Brain shift that occurs during neurosurgery disturbs the brain’s anatomy. Prediction of the brain shift is essential for accurate localisation of the surgical target. Biomechanical models have been envisaged a...

    Saima Safdar, Benjamin F. Zwick, Yue Yu in International Journal of Computer Assisted… (2023)

  3. No Access

    Article

    Morphological Features of Language Regions in Individuals with Tuberous Sclerosis Complex

    A significant number of individuals with tuberous sclerosis complex (TSC) exhibit language difficulties. Here, we examined the language-related brain morphometry in 59 participants (7 participants with TSC and...

    Banu Ahtam, Hyuk ** Yun, Rutvi Vyas in Journal of Autism and Developmental Disord… (2023)

  4. No Access

    Article

    Deep learning of birth-related infant clavicle fractures: a potential virtual consultant for fracture dating

    In infant abuse investigations, dating of skeletal injuries from radiographs is desirable to reach a clear timeline of traumatic events. Prior studies have used infant birth-related clavicle fractures as a sur...

    Andy Tsai, P. Ellen Grant, Simon K. Warfield, Yangming Ou in Pediatric Radiology (2022)

  5. No Access

    Chapter and Conference Paper

    Automatic Framework for Patient-Specific Biomechanical Computations of Organ Deformation: An Epilepsy (EEG) Case Study

    Our motivation is to enable non-specialists to use sophisticated biomechanical models in the clinic. To further this goal, in this study, we constructed a framework within 3D Slicer for automatically generatin...

    Saima Safdar, Benjamin Zwick, George Bourantas in Computational Biomechanics for Medicine (2022)

  6. No Access

    Article

    Free-breathing radial stack-of-stars three-dimensional Dixon gradient echo sequence in abdominal magnetic resonance imaging in sedated pediatric patients

    There is a strong need for improvements in motion robust T1-weighted abdominal imaging sequences in children to enable high-quality, free-breathing imaging.

    Patrick B. Duffy, Alto Stemmer, Michael J. Callahan in Pediatric Radiology (2021)

  7. Article

    Open Access

    A structural brain network of genetic vulnerability to psychiatric illness

    Psychiatry is undergoing a paradigm shift from the acceptance of distinct diagnoses to a representation of psychiatric illness that crosses diagnostic boundaries. How this transition is supported by a shared n...

    Maxime Taquet, Stephen M. Smith, Anna K. Prohl, Jurriaan M. Peters in Molecular Psychiatry (2021)

  8. No Access

    Chapter and Conference Paper

    MRI Super-Resolution Through Generative Degradation Learning

    Spatial resolution plays a critically important role in MRI for the precise delineation of the imaged tissues. Unfortunately, acquisitions with high spatial resolution require increased imaging time, which inc...

    Yao Sui, Onur Afacan, Ali Gholipour in Medical Image Computing and Computer Assis… (2021)

  9. Article

    Open Access

    Myofiber organization in the failing systemic right ventricle

    The right ventricle (RV) often fails when functioning as the systemic ventricle, but the cause is not understood. We tested the hypothesis that myofiber organization is abnormal in the failing systemic right v...

    Cosimo M. Campanale, Benoit Scherrer in Journal of Cardiovascular Magnetic Resonan… (2020)

  10. Article

    Correction to: Prospective pediatric study comparing glomerular filtration rate estimates based on motion-robust dynamic contrast-enhanced magnetic resonance imaging and serum creatinine (eGFR) to 99mTc DTPA

    The originally published version of this article contained a typographical error. In the text under the subheading “Dynamic contrast-enhanced MRI method, post-processing, and MR-GFR calculation” and in Table 1...

    Sila Kurugol, Onur Afacan, Richard S. Lee, Catherine M. Seager in Pediatric Radiology (2020)

  11. No Access

    Article

    Prospective pediatric study comparing glomerular filtration rate estimates based on motion-robust dynamic contrast-enhanced magnetic resonance imaging and serum creatinine (eGFR) to 99mTc DTPA

    Current methods to estimate glomerular filtration rate (GFR) have shortcomings. Estimates based on serum creatinine are known to be inaccurate in the chronically ill and during acute changes in renal function....

    Sila Kurugol, Onur Afacan, Richard S. Lee, Catherine M. Seager in Pediatric Radiology (2020)

  12. No Access

    Chapter and Conference Paper

    Learning a Gradient Guidance for Spatially Isotropic MRI Super-Resolution Reconstruction

    In MRI practice, it is inevitable to appropriately balance between image resolution, signal-to-noise ratio (SNR), and scan time. It has been shown that super-resolution reconstruction (SRR) is effective to ach...

    Yao Sui, Onur Afacan, Ali Gholipour in Medical Image Computing and Computer Assis… (2020)

  13. No Access

    Chapter and Conference Paper

    A Flux-Conservative Finite Difference Scheme for Anisotropic Bioelectric Problems

    We present a flux-conservative finite difference (FCFD) scheme for solving inhomogeneous anisotropic bioelectric problems. The method applies directly on the raw medical image data without the need for sophist...

    George C. Bourantas, Benjamin F. Zwick in Computational Biomechanics for Medicine (2020)

  14. Article

    Open Access

    Early white matter development is abnormal in tuberous sclerosis complex patients who develop autism spectrum disorder

    Autism spectrum disorder (ASD) is prevalent in tuberous sclerosis complex (TSC), occurring in approximately 50% of patients, and is hypothesized to be caused by disruption of neural circuits early in life. Tub...

    Anna K. Prohl, Benoit Scherrer in Journal of Neurodevelopmental Disorders (2019)

  15. No Access

    Article

    Motion-corrected foetal cardiac MRI

    Applying motion correction to standard foetal magnetic resonance imaging via image-registration techniques improves the diagnostic evaluation of cardiovascular structures in foetuses.

    Ali Gholipour, Simon K. Warfield in Nature Biomedical Engineering (2019)

  16. Article

    Open Access

    Extra-axonal restricted diffusion as an in-vivo marker of reactive microglia

    Reactive microgliosis is an important pathological component of neuroinflammation and has been implicated in a wide range of brain diseases including brain tumors, multiple sclerosis, Parkinson’s disease, Alzh...

    Maxime Taquet, Aleksandar Jankovski, Gaëtan Rensonnet, Damien Jacobs in Scientific Reports (2019)

  17. No Access

    Chapter

    Biomechanical Modelling of the Brain for Neuronavigation in Epilepsy Surgery

    Epilepsy is a chronic neurological disorder that affects over 70 million people, costs over $50 billion annually, and first arises during childhood for 75% of patients. Surgical intervention can be curative bu...

    Karol Miller, Angus C. R. Tavner, Louis P. M. Menagé in Biomechanics of the Brain (2019)

  18. No Access

    Chapter and Conference Paper

    Muti-shell Diffusion MRI Harmonisation and Enhancement Challenge (MUSHAC): Progress and Results

    We present a summary of competition results in the multi-shell diffusion and challenge (MUSHAC). MUSHAC is an open competition intended to stimulate the development of computational methods that reduce s...

    Lipeng Ning, Elisenda Bonet-Carne, Francesco Grussu in Computational Diffusion MRI (2019)

  19. No Access

    Chapter and Conference Paper

    Isotropic MRI Super-Resolution Reconstruction with Multi-scale Gradient Field Prior

    In this work, we proposed a novel image-based MRI super-resolution reconstruction (SRR) approach based on anisotropic acquisition schemes. We achieved superior reconstruction to state-of-the-art work by intro...

    Yao Sui, Onur Afacan, Ali Gholipour in Medical Image Computing and Computer Assis… (2019)

  20. Article

    Open Access

    Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure

    We present a study of multiple sclerosis segmentation algorithms conducted at the international MICCAI 2016 challenge. This challenge was operated using a new open-science computing infrastructure. This allowe...

    Olivier Commowick, Audrey Istace, Michaël Kain, Baptiste Laurent in Scientific Reports (2018)

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