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  1. Article

    Open Access

    Prostate cancer treatment in Portugal: a nationwide analysis

    Different treatment options exist for localized prostate cancer. Treatments performed in high-volume hospitals are associated with better results. Our objective was to describe time trends in prostate cancer t...

    Francisco Botelho, Rui Lopes, Francisco Pina, Carlos Silva in Scientific Reports (2023)

  2. Article

    Open Access

    Cancer lineage-specific regulation of YAP responsive elements revealed through large-scale functional epigenomic screens

    YAP is a key transcriptional co-activator of TEADs, it regulates cell growth and is frequently activated in cancer. In Malignant Pleural Mesothelioma (MPM), YAP is activated by loss-of-function mutations in up...

    Inês A. M. Barbosa, Rajaraman Gopalakrishnan, Samuele Mercan in Nature Communications (2023)

  3. No Access

    Article

    Modelling the impact of nucleolin expression level on the activity of F3 peptide-targeted pH-sensitive pegylated liposomes containing doxorubicin

    Strategies targeting nucleolin have enabled a significant improvement in intracellular bioavailability of their encapsulated payloads. In this respect, assessment of the impact of target cell heterogeneity and...

    Rui Lopes, Kevin Shi, Nuno A. Fonseca in Drug Delivery and Translational Research (2022)

  4. Article

    Open Access

    SARS-CoV-2 inhibition using a mucoadhesive, amphiphilic chitosan that may serve as an anti-viral nasal spray

    There are currently no cures for coronavirus infections, making the prevention of infections the only course open at the present time. The COVID-19 pandemic has been difficult to prevent, as the infection is s...

    Krzysztof Pyrć, Aleksandra Milewska, Emilia Barreto Duran in Scientific Reports (2021)

  5. No Access

    Article

    Real-time video frame differentiation in multihomed VANETs

    Providing high quality video transmission in VANETs is very challenging due to the highly dynamic, unpredictable topology, and low bandwidth characteristics. In this article, we design a system able to optimal...

    Rui Lopes, Miguel Luís, Susana Sargento in Wireless Networks (2021)

  6. Article

    Open Access

    PAX8 and MECOM are interaction partners driving ovarian cancer

    The transcription factor PAX8 is critical for the development of the thyroid and urogenital system. Comprehensive genomic screens furthermore indicate an additional oncogenic role for PAX8 in renal and ovarian...

    Melusine Bleu, Fanny Mermet-Meillon, Verena Apfel, Louise Barys in Nature Communications (2021)

  7. Article

    Open Access

    A comprehensive enhancer screen identifies TRAM2 as a key and novel mediator of YAP oncogenesis

    Frequent activation of the co-transcriptional factor YAP is observed in a large number of solid tumors. Activated YAP associates with enhancer loci via TEAD4-DNA-binding protein and stimulates cancer aggressiv...

    Li Li, Alejandro P. Ugalde, Colinda L. G. J. Scheele, Sebastian M. Dieter in Genome Biology (2021)

  8. No Access

    Article

    Orthorexia nervosa and comorbid depression successfully treated with mirtazapine: a case report

    Orthorexia nervosa (ON) is a recently proposed eating disordered behaviour characterized by an obsessional or exaggerated fixation on healthy eating. The published literature is scarce regarding its classifica...

    Rui Lopes, Raquel Melo in Eating and Weight Disorders - Studies on A… (2020)

  9. No Access

    Chapter and Conference Paper

    DSS-Based Ontology Alignment in Solid Reference System Configuration

    uebe.Q is a managing software for solid referential information systems, such as ISO 9000 (for quality) and ISO 1400 (for environment). This is a long-term developed software, encompassing extensive and solid ...

    Alexandre Gouveia, Paulo Maio, Nuno Silva, Rui Lopes in Hybrid Intelligent Systems (2020)

  10. No Access

    Article

    The Role of Hypernetworks as a Multilevel Methodology for Modelling and Understanding Dynamics of Team Sports Performance

    Despite its importance in many academic fields, traditional scientific methodologies struggle to cope with analysis of interactions in many complex adaptive systems, including team sports. Inherent features of...

    João Ribeiro, Keith Davids, Duarte Araújo, Pedro Silva, João Ramos in Sports Medicine (2019)

  11. Article

    Open Access

    PAX8 activates metabolic genes via enhancer elements in Renal Cell Carcinoma

    Transcription factor networks shape the gene expression programs responsible for normal cell identity and pathogenic state. Using Core Regulatory Circuitry analysis (CRC), we identify PAX8 as a candidate oncog...

    Melusine Bleu, Swann Gaulis, Rui Lopes, Kathleen Sprouffske in Nature Communications (2019)

  12. No Access

    Chapter and Conference Paper

    A Different Perspective on the Production and Application of Warm Mix Asphalt Under Unfavorable Temperature Conditions

    Warm mix asphalt (WMA) is produced by a variety of technologies at lower temperatures that enable to gain important environmental and social benefits and, in consequence, to contribute to a more sustainable tr...

    Rui Micaelo, José Neves, Rui Lopes in Transportation and Geotechniques: Material… (2019)

  13. No Access

    Article

    Integration of storage systems in distribution networks through multiobjective optimization

    The use of storage systems in distribution networks allows smoothing the load diagram. In fact, the cost of energy is different along the day and companies can be encouraged to use these systems, since the ext...

    V. Fernão Pires, Rui Lopes, Dulce Costa in Electrical Engineering (2018)

  14. No Access

    Protocol

    GRO-seq, A Tool for Identification of Transcripts Regulating Gene Expression

    The advent of next-generation sequencing (NGS) technologies has revolutionized the way we do research on gene expression. High-throughput transcriptomics became possible with the development of microarray tech...

    Rui Lopes, Reuven Agami, Gozde Korkmaz in Promoter Associated RNA (2017)

  15. No Access

    Article

    Applying CRISPR–Cas9 tools to identify and characterize transcriptional enhancers

    CRISPR–Cas9-based genome editing tools have been developed recently to study non-coding transcriptional regulatory elements, enabling the characterization of enhancers in their endogenous context. The applicat...

    Rui Lopes, Gozde Korkmaz, Reuven Agami in Nature Reviews Molecular Cell Biology (2016)

  16. No Access

    Article

    Tumour-specific proline vulnerability uncovered by differential ribosome codon reading

    Tumours can require certain amino acids for their proliferation, and the diricore method described here helps to identify such restrictive amino acids; using this method in kidney cancer tissue and breast carc...

    Fabricio Loayza-Puch, Koos Rooijers, Levi C. M. Buil, Jelle Zijlstra in Nature (2016)

  17. No Access

    Article

    Functional genetic screens for enhancer elements in the human genome using CRISPR-Cas9

    CRISPR-Cas9 is used for both enrichment and dropout screens of functional enhancers in human cells.

    Gozde Korkmaz, Rui Lopes, Alejandro P Ugalde in Nature Biotechnology (2016)

  18. Article

    Open Access

    Genome-wide profiling of p53-regulated enhancer RNAs uncovers a subset of enhancers controlled by a lncRNA

    p53 binds enhancers to regulate key target genes. Here, we globally mapped p53-regulated enhancers by looking at enhancer RNA (eRNA) production. Intriguingly, while many p53-induced enhancers contained p53-bin...

    Nicolas Léveillé, Carlos A. Melo, Koos Rooijers in Nature Communications (2015)

  19. No Access

    Article

    A case of choking phobia: towards a conceptual approach

    Choking phobia, also known as phagophobia or swallowing phobia is an uncommon clinical entity that has been underappreciated and is included in the new DSM-5 and upcoming ICD-11 diagnostic category of avoidant...

    Rui Lopes, Raquel Melo, Rosário Curral in Eating and Weight Disorders - Studies on A… (2014)

  20. No Access

    Book

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