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  1. Article

    Open Access

    A chromatinized origin reduces the mobility of ORC and MCM through interactions and spatial constraint

    Chromatin replication involves the assembly and activity of the replisome within the nucleosomal landscape. At the core of the replisome is the Mcm2-7 complex (MCM), which is loaded onto DNA after binding to t...

    Humberto Sánchez, Zhaowei Liu, Edo van Veen, Theo van Laar in Nature Communications (2023)

  2. Article

    Open Access

    Nucleotide binding halts diffusion of the eukaryotic replicative helicase during activation

    The eukaryotic replicative helicase CMG centrally orchestrates the replisome and leads the way at the front of replication forks. Understanding the motion of CMG on the DNA is therefore key to our understandin...

    Daniel Ramírez Montero, Humberto Sánchez, Edo van Veen in Nature Communications (2023)

  3. Article

    Open Access

    DNA replication origins retain mobile licensing proteins

    DNA replication in eukaryotes initiates at many origins distributed across each chromosome. Origins are bound by the origin recognition complex (ORC), which, with Cdc6 and Cdt1, recruits and loads the Mcm2-7 (...

    Humberto Sánchez, Kaley McCluskey, Theo van Laar, Edo van Veen in Nature Communications (2021)

  4. Article

    Open Access

    Chromatin fibers stabilize nucleosomes under torsional stress

    Torsional stress generated during DNA replication and transcription has been suggested to facilitate nucleosome unwrap** and thereby the progression of polymerases. However, the propagation of twist in conde...

    Artur Kaczmarczyk, He Meng, Orkide Ordu, John van Noort in Nature Communications (2020)

  5. Article

    Open Access

    Correction: Corrigendum: Applying torque to the Escherichia coli flagellar motor using magnetic tweezers

    Scientific Reports 7: Article number: 43285; published online: 07 March 2017; updated: 18 May 2018 The Acknowledgements section in this Article is incomplete. “We thank Seungkyu Ha, Yera Ye. Ussembayev, Richar...

    Maarten M. van Oene, Laura E. Dickinson, Bronwen Cross in Scientific Reports (2018)

  6. Article

    Open Access

    Applying torque to the Escherichia coli flagellar motor using magnetic tweezers

    The bacterial flagellar motor of Escherichia coli is a nanoscale rotary engine essential for bacterial propulsion. Studies on the power output of single motors rely on the measurement of motor torque and rotation...

    Maarten M. van Oene, Laura E. Dickinson, Bronwen Cross in Scientific Reports (2017)

  7. Article

    Correction: Corrigendum: Freely orbiting magnetic tweezers to directly monitor changes in the twist of nucleic acids

    Nature Communications 2: Article number: 439 (2011); Published: 23 August 2011; Updated: 27 May 2015 The published version of this article contains two errors. In equation (18), there is a typographical error ...

    Jan Lipfert, Matthew Wiggin, Jacob W.J. Kerssemakers in Nature Communications (2015)

  8. Article

    Open Access

    Slow unloading leads to DNA-bound β2-sliding clamp accumulation in live Escherichia coli cells

    The ubiquitous sliding clamp facilitates processivity of the replicative polymerase and acts as a platform to recruit proteins involved in replication, recombination and repair. While the dynamics of the E. coli ...

    M. Charl Moolman, Sriram Tiruvadi Krishnan in Nature Communications (2014)

  9. Article

    Open Access

    Freely orbiting magnetic tweezers to directly monitor changes in the twist of nucleic acids

    The double-stranded nature of DNA links its replication, transcription and repair to rotational motion and torsional strain. Magnetic tweezers (MT) are a powerful single-molecule technique to apply both forces...

    Jan Lipfert, Matthew Wiggin, Jacob W.J. Kerssemakers in Nature Communications (2011)

  10. No Access

    Article

    Antitumour drugs impede DNA uncoiling by topoisomerase I

    Topoisomerases are enzymes that act to relax supercoiling, a form of built-up strain in DNA. Topoisomerase inhibitors are important antitumour drugs, thought to act by stabilizing a covalent complex between th...

    Daniel A. Koster, Komaraiah Palle, Elisa S. M. Bot, Mary-Ann Bjornsti in Nature (2007)

  11. No Access

    Article

    Mesoscale conformational changes in the DNA-repair complex Rad50/Mre11/Nbs1 upon binding DNA

    Atherosclerotic plaques form when blood flow is disturbed and unusual patterns of mechanical stress are applied to the blood vessel wall. The endothelial cells lining these vessels play an important role in th...

    Fernando Moreno-Herrero, Martijn de Jager, Nynke H. Dekker, Roland Kanaar in Nature (2005)

  12. No Access

    Article

    Friction and torque govern the relaxation of DNA supercoils by eukaryotic topoisomerase IB

    The manoeuvres involved in replication and transcription lead to a build-up of twisting or torsional strain in DNA, and the job of relieving the strain falls to the topoisomerases. Type IB topoisomerases (TopI...

    Daniel A. Koster, Vincent Croquette, Cees Dekker, Stewart Shuman, Nynke H. Dekker in Nature (2005)