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  1. Article

    Open Access

    Sexual dimorphism and the multi-omic response to exercise training in rat subcutaneous white adipose tissue

    Subcutaneous white adipose tissue (scWAT) is a dynamic storage and secretory organ that regulates systemic homeostasis, yet the impact of endurance exercise training (ExT) and sex on its molecular landscape is...

    Gina M. Many, James A. Sanford, Tyler J. Sagendorf, Zhenxin Hou in Nature Metabolism (2024)

  2. No Access

    Article

    Metabolomic and genetic architecture of gestational diabetes subtypes

    Physiological gestational diabetes mellitus (GDM) subtypes that may confer different risks for adverse pregnancy outcomes have been defined. The aim of this study was to characterise the metabolome and genetic...

    Kristen Lee, Alan Kuang, James R. Bain, M. Geoffrey Hayes in Diabetologia (2024)

  3. Article

    Open Access

    Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic food for malnutrition

    Microbiota-directed complementary food (MDCF) formulations have been designed to repair the gut communities of malnourished children. A randomized controlled trial demonstrated that one formulation, MDCF-2, im...

    Hao-Wei Chang, Evan M. Lee, Yi Wang, Cyrus Zhou, Kali M. Pruss in Nature Microbiology (2024)

  4. Article

    Open Access

    Circulating metabolic profile in idiopathic pulmonary fibrosis: data from the IPF-PRO Registry

    The circulating metabolome, reflecting underlying cellular processes and disease biology, has not been fully characterized in patients with idiopathic pulmonary fibrosis (IPF). We evaluated whether circulating...

    Ross Summer, Jamie L. Todd, Megan L. Neely, L. Jason Lobo in Respiratory Research (2024)

  5. Article

    Open Access

    Correction: Path-level interpretation of Gaussian graphical models using the pair-path subscore

    Nathan P. Gill, Raji Balasubramanian, James R. Bain in BMC Bioinformatics (2022)

  6. Article

    Open Access

    Association of lipid profile biomarkers with breast cancer by molecular subtype: analysis of the MEND study

    There is conflicting evidence on the role of lipid biomarkers in breast cancer (BC), and no study to our knowledge has examined this association among African women. We estimated odds ratios (ORs) and 95% conf...

    Anjali Gupta, Veeral Saraiya, April Deveaux, Taofik Oyekunle in Scientific Reports (2022)

  7. Article

    Open Access

    Path-level interpretation of Gaussian graphical models using the pair-path subscore

    Construction of networks from cross-sectional biological data is increasingly common. Many recent methods have been based on Gaussian graphical modeling, and prioritize estimation of conditional pairwise depen...

    Nathan P. Gill, Raji Balasubramanian, James R. Bain in BMC Bioinformatics (2022)

  8. No Access

    Article

    Urine tricarboxylic acid cycle signatures of early-stage diabetic kidney disease

    Urine tricarboxylic acid (TCA) cycle organic anions (OAs) are elevated in diabetes and may be biomarkers for diabetic kidney disease (DKD) progression.

    Joseph Lunyera, Clarissa J. Diamantidis, Hayden B. Bosworth, Uptal D. Patel in Metabolomics (2021)

  9. Article

    Open Access

    A metabolomics comparison of plant-based meat and grass-fed meat indicates large nutritional differences despite comparable Nutrition Facts panels

    A new generation of plant-based meat alternatives—formulated to mimic the taste and nutritional composition of red meat—have attracted considerable consumer interest, research attention, and media coverage. Th...

    Stephan van Vliet, James R. Bain, Michael J. Muehlbauer in Scientific Reports (2021)

  10. Article

    Open Access

    Branched-chain α-ketoacids are preferentially reaminated and activate protein synthesis in the heart

    Branched-chain amino acids (BCAA) and their cognate α-ketoacids (BCKA) are elevated in an array of cardiometabolic diseases. Here we demonstrate that the major metabolic fate of uniformly-13C-labeled α-ketoisoval...

    Jacquelyn M. Walejko, Bridgette A. Christopher, Scott B. Crown in Nature Communications (2021)

  11. Article

    Open Access

    Metabolites and diabetes remission after weight loss

    There is marked heterogeneity in the response to weight loss interventions with regards to weight loss amount and metabolic improvement. We sought to identify biomarkers predictive of type 2 diabetes remission...

    Lydia Coulter Kwee, Olga Ilkayeva, Michael J. Muehlbauer in Nutrition & Diabetes (2021)

  12. Article

    Metabolomic and genetic associations with insulin resistance in pregnancy

    Our study aimed to integrate maternal metabolic and genetic data related to insulin sensitivity during pregnancy to provide novel insights into mechanisms underlying pregnancy-induced insulin resistance.

    Yu Liu, Alan Kuang, Octavious Talbot, James R. Bain, Michael J. Muehlbauer in Diabetologia (2020)

  13. Article

    Open Access

    Non-targeted urinary metabolomics in pregnancy and associations with fetal growth restriction

    Our objective was to identify metabolites associated with fetal growth restriction (FGR) by examining early and late pregnancy differences in non-targeted urinary metabolites among FGR cases and non-FGR contro...

    Chelsea M. Clinton, James R. Bain, Michael J. Muehlbauer, YuanYuan Li in Scientific Reports (2020)

  14. Article

    Open Access

    Disrupted Maturation of the Microbiota and Metabolome among Extremely Preterm Infants with Postnatal Growth Failure

    Growth failure during infancy is a major global problem that has adverse effects on long-term health and neurodevelopment. Preterm infants are disproportionately affected by growth failure and its effects. Her...

    Noelle E. Younge, Christopher B. Newgard, C. Michael Cotten in Scientific Reports (2019)

  15. Article

    Maternal metabolites during pregnancy are associated with newborn outcomes and hyperinsulinaemia across ancestries

    We aimed to determine the association of maternal metabolites with newborn adiposity and hyperinsulinaemia in a multi-ethnic cohort of mother–newborn dyads.

    Rachel Kadakia, Michael Nodzenski, Octavious Talbot, Alan Kuang in Diabetologia (2019)

  16. Article

    Open Access

    Ten weeks of high-intensity interval walk training is associated with reduced disease activity and improved innate immune function in older adults with rheumatoid arthritis: a pilot study

    Rheumatoid arthritis (RA) is a chronic inflammatory disease in which adults have significant joint issues leading to poor health. Poor health is compounded by many factors, including exercise avoidance and inc...

    David B. Bartlett, Leslie H. Willis, Cris A. Slentz in Arthritis Research & Therapy (2018)

  17. No Access

    Article

    Metabolites predict cardiovascular disease events in persons living with HIV: a pilot case–control study

    Persons living with HIV (PLWH) are at higher risk for cardiovascular disease (CVD) events than uninfected persons. Current risk-stratification methods to define PLWH at highest risk for CVD events are lacking.

    Nwora Lance Okeke, Damian M. Craig, Michael J. Muehlbauer, Olga Ilkayeva in Metabolomics (2018)

  18. No Access

    Article

    Untargeted metabolomics analysis of ischemia–reperfusion-injured hearts ex vivo from sedentary and exercise-trained rats

    The effects of exercise on the heart and its resistance to disease are well-documented. Recent studies have identified that exercise-induced resistance to arrhythmia is due to the preservation of mitochondrial...

    Traci L. Parry, Joseph W. Starnes, Sara K. O’Neal, James R. Bain in Metabolomics (2017)

  19. Article

    Associations of maternal BMI and insulin resistance with the maternal metabolome and newborn outcomes

    Maternal obesity increases the risk for large-for-gestational-age birth and excess newborn adiposity, which are associated with adverse long-term metabolic outcomes in offspring, probably due to effects mediat...

    Victoria Sandler, Anna C. Reisetter, James R. Bain, Michael J. Muehlbauer in Diabetologia (2017)

  20. Article

    Open Access

    Mixture model normalization for non-targeted gas chromatography/mass spectrometry metabolomics data

    Metabolomics offers a unique integrative perspective for health research, reflecting genetic and environmental contributions to disease-related phenotypes. Identifying robust associations in population-based o...

    Anna C. Reisetter, Michael J. Muehlbauer, James R. Bain in BMC Bioinformatics (2017)

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