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  1. Article

    Open Access

    Circulating cell-free DNA methylation mirrors alterations in cerebral patterns in epilepsy

    DNA methylation profiling of circulating cell-free DNA (cfDNA) has rapidly become a promising strategy for biomarker identification and development. The cell-type-specific nature of DNA methylation patterns an...

    Ricardo Martins-Ferreira, Bárbara Leal, João Chaves, Laura Ciudad in Clinical Epigenetics (2022)

  2. Article

    Open Access

    Epigenetic and transcriptomic reprogramming in monocytes of severe COVID-19 patients reflects alterations in myeloid differentiation and the influence of inflammatory cytokines

    COVID-19 manifests with a wide spectrum of clinical phenotypes, ranging from asymptomatic and mild to severe and critical. Severe and critical COVID-19 patients are characterized by marked changes in the myelo...

    Gerard Godoy-Tena, Anis Barmada, Octavio Morante-Palacios in Genome Medicine (2022)

  3. Article

    Open Access

    Single-cell Atlas of common variable immunodeficiency shows germinal center-associated epigenetic dysregulation in B-cell responses

    Common variable immunodeficiency (CVID), the most prevalent symptomatic primary immunodeficiency, displays impaired terminal B-cell differentiation and defective antibody responses. Incomplete genetic penetran...

    Javier Rodríguez-Ubreva, Anna Arutyunyan, Marc Jan Bonder in Nature Communications (2022)

  4. Article

    Open Access

    Targeting aberrant DNA methylation in mesenchymal stromal cells as a treatment for myeloma bone disease

    Multiple myeloma (MM) progression and myeloma-associated bone disease (MBD) are highly dependent on bone marrow mesenchymal stromal cells (MSCs). MM-MSCs exhibit abnormal transcriptomes, suggesting the involve...

    Antonio Garcia-Gomez, Tianlu Li, Carlos de la Calle-Fabregat in Nature Communications (2021)

  5. Article

    Open Access

    Epigenomics and transcriptomics of systemic sclerosis CD4+ T cells reveal long-range dysregulation of key inflammatory pathways mediated by disease-associated susceptibility loci

    Systemic sclerosis (SSc) is a genetically complex autoimmune disease mediated by the interplay between genetic and epigenetic factors in a multitude of immune cells, with CD4+ T lymphocytes as one of the princ...

    Tianlu Li, Lourdes Ortiz-Fernández, Eduardo Andrés-León, Laura Ciudad in Genome Medicine (2020)

  6. Article

    Open Access

    Inflammatory cytokines and organ dysfunction associate with the aberrant DNA methylome of monocytes in sepsis

    Sepsis, a life-threatening organ dysfunction caused by a dysregulated systemic immune response to infection, associates with reduced responsiveness to subsequent infections. How such tolerance is acquired is n...

    Clara Lorente-Sorolla, Antonio Garcia-Gomez, Francesc Català-Moll in Genome Medicine (2019)

  7. Article

    Open Access

    Activation-induced cytidine deaminase targets SUV4-20-mediated histone H4K20 trimethylation to class-switch recombination sites

    Activation-induced cytidine deaminase (AID) triggers antibody diversification in B cells by catalysing deamination and subsequently mutating immunoglobulin (Ig) genes. Association of AID with RNA Pol II and oc...

    Virginia C. Rodríguez-Cortez, Paloma Martínez-Redondo in Scientific Reports (2017)

  8. Article

    Open Access

    Monozygotic twins discordant for common variable immunodeficiency reveal impaired DNA demethylation during naïve-to-memory B-cell transition

    Common variable immunodeficiency (CVID), the most frequent primary immunodeficiency characterized by loss of B-cell function, depends partly on genetic defects, and epigenetic changes are thought to contribute...

    Virginia C. Rodríguez-Cortez, Lucia del Pino-Molina in Nature Communications (2015)

  9. Article

    Open Access

    NF-κB-direct activation of microRNAs with repressive effects on monocyte-specific genes is critical for osteoclast differentiation

    Monocyte-to-osteoclast conversion is a unique terminal differentiation process that is exacerbated in rheumatoid arthritis and bone metastasis. The mechanisms implicated in upregulating osteoclast-specific gen...

    Lorenzo de la Rica, Antonio García-Gómez, Natalia R Comet in Genome Biology (2015)

  10. Article

    Open Access

    Epigenetic alterations in autoimmune disease

    Esteban Ballestar, Biola M Javierre in Journal of Translational Medicine (2011)

  11. No Access

    Article

    Conservation of fruitless’ role as master regulator of male courtship behaviour from cockroaches to flies

    In Drosophila melanogaster, male courtship behaviour is regulated by the fruitless gene. In D. melanogaster, fruitless encodes a set of putative transcription factors that are sex-specifically spliced. Male-speci...

    Elke Clynen, Laura Ciudad, Xavier Bellés in Development Genes and Evolution (2011)

  12. Article

    Open Access

    Structural and RNAi characterization of the German cockroach lipophorin receptor, and the evolutionary relationships of lipoprotein receptors

    Lipophorin receptors (LpRs) have been described in a number of insects, but functional studies have been reported only in locusts and mosquitoes. The aim of the present work was to characterize the LpR of the ...

    Laura Ciudad, Xavier Bellés, Maria-Dolors Piulachs in BMC Molecular Biology (2007)