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  1. No Access

    Article

    Neoplasia risk in patients with Lynch syndrome treated with immune checkpoint blockade

    Metastatic and localized mismatch repair-deficient (dMMR) tumors are exquisitely sensitive to immune checkpoint blockade (ICB). The ability of ICB to prevent dMMR malignant or pre-malignant neoplasia developme...

    Emily C. Harrold, Michael B. Foote, Benoit Rousseau, Henry Walch in Nature Medicine (2023)

  2. No Access

    Article

    Clonal evolution during metastatic spread in high-risk neuroblastoma

    Patients with high-risk neuroblastoma generally present with widely metastatic disease and often relapse despite intensive therapy. As most studies to date focused on diagnosis-relapse pairs, our understanding...

    Gunes Gundem, Max F. Levine, Stephen S. Roberts, Irene Y. Cheung in Nature Genetics (2023)

  3. No Access

    Article

    Overall survival with circulating tumor DNA-guided therapy in advanced non-small-cell lung cancer

    Circulating tumor DNA (ctDNA) sequencing guides therapy decisions but has been studied mostly in small cohorts without sufficient follow-up to determine its influence on overall survival. We prospectively foll...

    Justin Jee, Emily S. Lebow, Randy Yeh, Jeeban P. Das, Azadeh Namakydoust in Nature Medicine (2022)

  4. No Access

    Article

    Genomic and transcriptomic determinants of response to neoadjuvant therapy in rectal cancer

    The incidence of rectal cancer is increasing in patients younger than 50 years. Locally advanced rectal cancer is still treated with neoadjuvant radiation, chemotherapy and surgery, but recent evidence suggest...

    Walid K. Chatila, ** K. Kim, Henry Walch, Michael R. Marco in Nature Medicine (2022)

  5. Article

    Correction: Natural history, response to systemic therapy, and genomic landscape of plasmacytoid urothelial carcinoma

    Min Yuen Teo, Hikmat Al-Ahmadie, Kenneth Seier in British Journal of Cancer (2022)

  6. No Access

    Article

    The context-specific role of germline pathogenicity in tumorigenesis

    Human cancers arise from environmental, heritable and somatic factors, but how these mechanisms interact in tumorigenesis is poorly understood. Studying 17,152 prospectively sequenced patients with cancer, we ...

    Preethi Srinivasan, Chaitanya Bandlamudi, Philip Jonsson, Yelena Kemel in Nature Genetics (2021)

  7. No Access

    Article

    Clinical cancer genomic profiling

    Technological innovation and rapid reduction in sequencing costs have enabled the genomic profiling of hundreds of cancer-associated genes as a component of routine cancer care. Tumour genomic profiling can re...

    Debyani Chakravarty, David B. Solit in Nature Reviews Genetics (2021)

  8. Article

    Open Access

    Tumor fraction-guided cell-free DNA profiling in metastatic solid tumor patients

    Cell-free DNA (cfDNA) profiling is increasingly used to guide cancer care, yet mutations are not always identified. The ability to detect somatic mutations in plasma depends on both assay sensitivity and the f...

    Dana W. Y. Tsui, Michael L. Cheng, Maha Shady, Julie L. Yang in Genome Medicine (2021)

  9. Article

    Open Access

    Natural history, response to systemic therapy, and genomic landscape of plasmacytoid urothelial carcinoma

    Plasmacytoid urothelial carcinoma (PUC) is a rare, aggressive histologic variant of urothelial cancer characterised by a diffuse growth pattern and CDH1 mutation. We studied the efficacy of preoperative platinum-...

    Min Yuen Teo, Hikmat Al-Ahmadie, Kenneth Seier in British Journal of Cancer (2021)

  10. No Access

    Article

    The association between tumor mutational burden and prognosis is dependent on treatment context

    In multiple cancer types, high tumor mutational burden (TMB) is associated with longer survival after treatment with immune checkpoint inhibitors (ICIs). The association of TMB with survival outside of the imm...

    Cristina Valero, Mark Lee, Douglas Hoen, **gming Wang, Zaineb Nadeem in Nature Genetics (2021)

  11. Article

    Open Access

    Phase 2 study of buparlisib (BKM120), a pan-class I PI3K inhibitor, in patients with metastatic triple-negative breast cancer

    Treatment options for triple-negative breast cancer remain limited. Activation of the PI3K pathway via loss of PTEN and/or INPP4B is common. Buparlisib is an orally bioavailable, pan-class I PI3K inhibitor. We ev...

    Ana C. Garrido-Castro, Cristina Saura, Romualdo Barroso-Sousa in Breast Cancer Research (2020)

  12. No Access

    Article

    Cancer therapy shapes the fitness landscape of clonal hematopoiesis

    Acquired mutations are pervasive across normal tissues. However, understanding of the processes that drive transformation of certain clones to cancer is limited. Here we study this phenomenon in the context of...

    Kelly L. Bolton, Ryan N. Ptashkin, Teng Gao, Lior Braunstein in Nature Genetics (2020)

  13. No Access

    Article

    High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants

    Accurate identification of tumor-derived somatic variants in plasma circulating cell-free DNA (cfDNA) requires understanding of the various biological compartments contributing to the cfDNA pool. We sought to ...

    Pedram Razavi, Bob T. Li, David N. Brown, Byoungsok Jung, Earl Hubbell in Nature Medicine (2019)

  14. No Access

    Article

    Activating mutations in CSF1R and additional receptor tyrosine kinases in histiocytic neoplasms

    Histiocytoses are clonal hematopoietic disorders frequently driven by mutations map** to the BRAF and MEK1 and MEK2 kinases. Currently, however, the developmental origins of histiocytoses in patients are not...

    Benjamin H. Durham, Estibaliz Lopez Rodrigo, Jennifer Picarsic in Nature Medicine (2019)

  15. Article

    Open Access

    PIK3CA and MAP3K1 alterations imply luminal A status and are associated with clinical benefit from pan-PI3K inhibitor buparlisib and letrozole in ER+ metastatic breast cancer

    Clinical trials have demonstrated the efficacy of combining phosphoinositide 3-kinase (PI3K) inhibitors with endocrine therapies in hormone therapy-refractory breast cancer. However, biomarkers of PI3K pathway...

    Mellissa J. Nixon, Luigi Formisano, Ingrid A. Mayer in npj Breast Cancer (2019)

  16. No Access

    Article

    Tumor mutational load predicts survival after immunotherapy across multiple cancer types

    Immune checkpoint inhibitor (ICI) treatments benefit some patients with metastatic cancers, but predictive biomarkers are needed. Findings in selected cancer types suggest that tumor mutational burden (TMB) ma...

    Robert M. Samstein, Chung-Han Lee, Alexander N. Shoushtari in Nature Genetics (2019)

  17. No Access

    Article

    Clinical tumour sequencing for precision oncology: time for a universal strategy

    Routine, comprehensive molecular characterization of patient tumours has the potential to accelerate therapeutic advances and inform cancer biology. Here, we describe insights from the implementation of an ent...

    Michael L. Cheng, Michael F. Berger, David M. Hyman in Nature Reviews Cancer (2018)

  18. No Access

    Article

    Genome doubling shapes the evolution and prognosis of advanced cancers

    Ploidy abnormalities are a hallmark of cancer, but their impact on the evolution and outcomes of cancers is unknown. Here, we identified whole-genome doubling (WGD) in the tumors of nearly 30% of 9,692 prospec...

    Craig M. Bielski, Ahmet Zehir, Alexander V. Penson, Mark T. A. Donoghue in Nature Genetics (2018)

  19. Article

    Erratum: Mutational landscape of metastatic cancer revealed from prospective clinical sequencing of 10,000 patients

    Nat. Med. 23, 703–713 (2017); published online 08 May 2017; corrected after print 14 June 2017 In the version of this article initially published online, the top value in the y axis of the Kaplan–Meier plots i...

    Ahmet Zehir, Ryma Benayed, Ronak H Shah, Aijazuddin Syed, Sumit Middha in Nature Medicine (2017)

  20. No Access

    Article

    Mutational landscape of metastatic cancer revealed from prospective clinical sequencing of 10,000 patients

    MSK-IMPACT is a clinical sequencing platform able to detect genomic mutations, copy number alterations and structural variants in a panel of cancer-related genes. This assay is implemented prospectively to inf...

    Ahmet Zehir, Ryma Benayed, Ronak H Shah, Aijazuddin Syed, Sumit Middha in Nature Medicine (2017)

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