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    Article

    ATFS-1 counteracts mitochondrial DNA damage by promoting repair over transcription

    The ability to balance conflicting functional demands is critical for ensuring organismal survival. The transcription and repair of the mitochondrial genome (mtDNA) requires separate enzymatic activities that ...

    Chuan-Yang Dai, Chai Chee Ng, Grace Ching Ching Hung, Ina Kirmes in Nature Cell Biology (2023)

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    Article

    LONP-1 and ATFS-1 sustain deleterious heteroplasmy by promoting mtDNA replication in dysfunctional mitochondria

    The accumulation of deleterious mitochondrial DNA (∆mtDNA) causes inherited mitochondrial diseases and ageing-associated decline in mitochondrial functions such as oxidative phosphorylation. Following mitochon...

    Qiyuan Yang, Pengpeng Liu, Nadine S. Anderson, Tomer Shpilka in Nature Cell Biology (2022)

  3. Article

    Open Access

    Genome-wide detection of CRISPR editing in vivo using GUIDE-tag

    Analysis of off-target editing is an important aspect of the development of safe nuclease-based genome editing therapeutics. in vivo assessment of nuclease off-target activity has primarily been indirect (base...

    Shun-Qing Liang, Pengpeng Liu, Jordan L. Smith, Esther Mintzer in Nature Communications (2022)

  4. Article

    Open Access

    UPRmt scales mitochondrial network expansion with protein synthesis via mitochondrial import in Caenorhabditis elegans

    As organisms develop, individual cells generate mitochondria to fulfill physiological requirements. However, it remains unknown how mitochondrial network expansion is scaled to cell growth. The mitochondrial u...

    Tomer Shpilka, YunGuang Du, Qiyuan Yang, Andrew Melber in Nature Communications (2021)

  5. Article

    Open Access

    UPRmt regulation and output: a stress response mediated by mitochondrial-nuclear communication

    The mitochondrial network is not only required for the production of energy, essential cofactors and amino acids, but also serves as a signaling hub for innate immune and apoptotic pathways. Multiple mechanism...

    Andrew Melber, Cole M Haynes in Cell Research (2018)

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    Article

    The mitochondrial UPR: mechanisms, physiological functions and implications in ageing

  7. The mitochondrial unfolded protein response (UPRmt) is a conserved transcriptional response activated by multiple forms of mitochondrial dysfunction and regula...

  8. Tomer Shpilka, Cole M. Haynes in Nature Reviews Molecular Cell Biology (2018)

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    Book

  10. Article

    The mitokine quest(ion)

    Cells and organisms adapt to mitochondrial dysfunction by activating the mitochondrial unfolded protein response (UPRmt), which is regulated by mitochondrial-to-nuclear communication; and UPRmt activation can als...

    Pan Deng, Cole M Haynes in Cell Research (2016)

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    Article

    Maintenance and propagation of a deleterious mitochondrial genome by the mitochondrial unfolded protein response

    In the context of mitochondrial genome heteroplasmy that causes defective oxidative phosphorylation in C. elegans, the ATFS-1-mediated mitochondrial unfolded protein response maintains the deleterious mitochondri...

    Yi-Fan Lin, Anna M. Schulz, Mark W. Pellegrino, Yun Lu, Shai Shaham in Nature (2016)

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    Article

    Surviving import failure

    Two studies reveal that dysfunction in organelles called mitochondria causes the toxic accumulation of mitochondrial proteins in the cell's cytosolic fluid, and identify ways in which damage is mitigated. See Let...

    Cole M. Haynes in Nature (2015)

  13. Article

    Alan Hall 1952–2015

    Filippo G. Giancotti, Cole M. Haynes, Laura M. Machesky in Nature Cell Biology (2015)

  14. Article

    Open Access

    Mitophagy and the mitochondrial unfolded protein response in neurodegeneration and bacterial infection

    Mitochondria are highly dynamic and structurally complex organelles that provide multiple essential metabolic functions. Mitochondrial dysfunction is associated with neurodegenerative conditions such as Parkin...

    Mark W Pellegrino, Cole M Haynes in BMC Biology (2015)

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    Article

    Mitochondrial UPR-regulated innate immunity provides resistance to pathogen infection

    A link between an intracellular stress response, bacterial infection and triggering of the innate immune response is shown in Caenorhabditis elegans; exposure to the pathogen Pseudomonas aeruginosa caused activat...

    Mark W. Pellegrino, Amrita M. Nargund, Natalia V. Kirienko, Reba Gillis in Nature (2014)

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    Article

    Autophagy machinery mediates macroendocytic processing and entotic cell death by targeting single membranes

    Autophagy normally involves the formation of double-membrane autophagosomes that mediate bulk cytoplasmic and organelle degradation. Here we report the modification of single-membrane vacuoles in cells by auto...

    Oliver Florey, Sung Eun Kim, Cynthia P. Sandoval, Cole M. Haynes in Nature Cell Biology (2011)