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  1. Article

    Open Access

    Network analysis reveals dysregulated functional patterns in type II diabetic skin

    Skin disorders are one of the most common complications of type II diabetes (T2DM). Long-term effects of high blood glucose leave individuals with T2DM more susceptible to cutaneous diseases, but its underlyin...

    Chunan Liu, Sudha Ram, Bonnie L. Hurwitz in Scientific Reports (2022)

  2. Article

    Open Access

    The dynamic wound microbiome

    Diabetic foot ulcers (DFUs) account for the majority of all limb amputations and hospitalizations due to diabetes complications. With 30 million cases of diabetes in the USA and 500,000 new diagnoses each year...

    Chunan Liu, Alise J. Ponsero, David G. Armstrong, Benjamin A. Lipsky in BMC Medicine (2020)

  3. Article

    Open Access

    COVID-19 pandemic reveals the peril of ignoring metadata standards

    Efficient response to the pandemic through the mobilization of the larger scientific community is challenged by the limited reusability of the available primary genomic data. Here, the Genomic Standards Consor...

    Lynn M. Schriml, Maria Chuvochina, Neil Davies, Emiley A. Eloe-Fadrosh in Scientific Data (2020)

  4. Article

    Open Access

    Minimum Information about an Uncultivated Virus Genome (MIUViG)

    This paper presents standards and best practices for reporting genome sequences of uncultivated viruses.

    Simon Roux, Evelien M Adriaenssens, Bas E Dutilh, Eugene V Koonin in Nature Biotechnology (2019)

  5. Article

    Open Access

    Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition

    A unique collection of oceanic samples was gathered by the Tara Oceans expeditions (2009–2013), targeting plankton organisms ranging from viruses to metazoans, and providing rich environmental context measurement...

    Adriana Alberti, Julie Poulain, Stefan Engelen, Karine Labadie in Scientific Data (2017)

  6. Article

    Open Access

    Microbiology of diabetic foot infections: from Louis Pasteur to ‘crime scene investigation’

    Were he alive today, would Louis Pasteur still champion culture methods he pioneered over 150 years ago for identifying bacterial pathogens? Or, might he suggest that new molecular techniques may prove a bette...

    Anne Spichler, Bonnie L Hurwitz, David G Armstrong, Benjamin A Lipsky in BMC Medicine (2015)

  7. Article

    Open Access

    Metabolic reprogramming by viruses in the sunlit and dark ocean

    Marine ecosystem function is largely determined by matter and energy transformations mediated by microbial community interaction networks. Viral infection modulates network properties through mortality, gene t...

    Bonnie L Hurwitz, Steven J Hallam, Matthew B Sullivan in Genome Biology (2013)