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  1. Article

    Open Access

    The burden and dynamics of hospital-acquired SARS-CoV-2 in England

    Hospital-based transmission had a dominant role in Middle East respiratory syndrome coronavirus (MERS-CoV) and severe acute respiratory syndrome coronavirus (SARS-CoV) epidemics1,2, but large-scale studies of its...

    Ben S. Cooper, Stephanie Evans, Yalda Jafari, Thi Mui Pham, Yin Mo, Cherry Lim in Nature (2023)

  2. Article

    Open Access

    The uncertain role of substandard and falsified medicines in the emergence and spread of antimicrobial resistance

    Approximately 10% of antimicrobials used by humans in low- and middle-income countries are estimated to be substandard or falsified. In addition to their negative impact on morbidity and mortality, they may al...

    Sean Cavany, Stella Nanyonga, Cathrin Hauk, Cherry Lim in Nature Communications (2023)

  3. Article

    Open Access

    Estimation of the impact of hospital-onset SARS-CoV-2 infections on length of stay in English hospitals using causal inference

    From March 2020 through August 2021, 97,762 hospital-onset SARS-CoV-2 infections were detected in English hospitals. Resulting excess length of stay (LoS) created a potentially substantial health and economic ...

    James Stimson, Koen B. Pouwels, Russell Hope, Ben S. Cooper in BMC Infectious Diseases (2022)

  4. Article

    Open Access

    The contribution of hospital-acquired infections to the COVID-19 epidemic in England in the first half of 2020

    SARS-CoV-2 is known to transmit in hospital settings, but the contribution of infections acquired in hospitals to the epidemic at a national scale is unknown.

    Gwenan M. Knight, Thi Mui Pham, James Stimson, Sebastian Funk in BMC Infectious Diseases (2022)

  5. Article

    Open Access

    Probabilistic modelling of effects of antibiotics and calendar time on transmission of healthcare-associated infection

    Healthcare-associated infection and antimicrobial resistance are major concerns. However, the extent to which antibiotic exposure affects transmission and detection of infections such as MRSA is unclear. Addit...

    Mirjam Laager, Ben S. Cooper, David W. Eyre in Scientific Reports (2021)

  6. No Access

    Article

    Pervasive transmission of a carbapenem resistance plasmid in the gut microbiota of hospitalized patients

    Infections caused by carbapenemase-producing enterobacteria (CPE) are a major concern in clinical settings worldwide. Two fundamentally different processes shape the epidemiology of CPE in hospitals: the disse...

    Ricardo León-Sampedro, Javier DelaFuente, Cristina Díaz-Agero in Nature Microbiology (2021)

  7. Article

    Open Access

    Optimising trial designs to identify appropriate antibiotic treatment durations

    For many infectious conditions, the optimal antibiotic course length remains unclear. The estimation of course length must consider the important trade-off between maximising short- and long-term efficacy and ...

    Koen B. Pouwels, Mo Yin, Christopher C. Butler, Ben S. Cooper in BMC Medicine (2019)

  8. Article

    Open Access

    Microbiology Investigation Criteria for Reporting Objectively (MICRO): a framework for the reporting and interpretation of clinical microbiology data

    There is a pressing need to understand better the extent and distribution of antimicrobial resistance on a global scale, to inform development of effective interventions. Collation of datasets for meta-analysi...

    Paul Turner, Andrew Fox-Lewis, Poojan Shrestha, David A. B. Dance in BMC Medicine (2019)

  9. Article

    Open Access

    Enumerating the economic cost of antimicrobial resistance per antibiotic consumed to inform the evaluation of interventions affecting their use

    Antimicrobial resistance (AMR) poses a colossal threat to global health and incurs high economic costs to society. Economic evaluations of antimicrobials and interventions such as diagnostics and vaccines that...

    Poojan Shrestha, Ben S. Cooper, Joanna Coast in Antimicrobial Resistance & Infection Contr… (2018)

  10. Article

    Open Access

    Simulations for designing and interpreting intervention trials in infectious diseases

    Interventions in infectious diseases can have both direct effects on individuals who receive the intervention as well as indirect effects in the population. In addition, intervention combinations can have comp...

    M. Elizabeth Halloran, Kari Auranen, Sarah Baird, Nicole E. Basta in BMC Medicine (2017)

  11. Article

    Open Access

    Multiplex PCR point of care testing versus routine, laboratory-based testing in the treatment of adults with respiratory tract infections: a quasi-randomised study assessing impact on length of stay and antimicrobial use

    Laboratory-based respiratory pathogen (RP) results are often available too late to influence clinical decisions such as hospitalisation or antibiotic treatment due to time delay in transport of specimens and test...

    Denise Andrews, Yumela Chetty, Ben S. Cooper, Man**der Virk in BMC Infectious Diseases (2017)

  12. Article

    Open Access

    Multiple time scales in modeling the incidence of infections acquired in intensive care units

    When patients are admitted to an intensive care unit (ICU) their risk of getting an infection will be highly depend on the length of stay at-risk in the ICU. In addition, risk of infection is likely to vary ov...

    Martin Wolkewitz, Ben S. Cooper in BMC Medical Research Methodology (2016)

  13. Article

    Open Access

    Variable performance of models for predicting methicillin-resistant Staphylococcus aureus carriage in European surgical wards

    Predictive models to identify unknown methicillin-resistant Staphylococcus aureus (MRSA) carriage on admission may optimise targeted MRSA screening and efficient use of resources. However, common approaches to mo...

    Andie S Lee, Angelo Pan, Stephan Harbarth, Andrea Patroni in BMC Infectious Diseases (2015)

  14. Article

    Open Access

    Multilevel competing risk models to evaluate the risk of nosocomial infection

    Risk factor analyses for nosocomial infections (NIs) are complex. First, due to competing events for NI, the association between risk factors of NI as measured using hazard rates may not coincide with the asso...

    Martin Wolkewitz, Ben S Cooper, Mercedes Palomar-Martinez in Critical Care (2014)

  15. Article

    Open Access

    Long-term survival after intensive care unit discharge in Thailand: a retrospective study

    Economic evaluations of interventions in the hospital setting often rely on the estimated long-term impact on patient survival. Estimates of mortality rates and long-term outcomes among patients discharged ali...

    Nantasit Luangasanatip, Maliwan Hongsuwan, Yoel Lubell in Critical Care (2013)

  16. Article

    Open Access

    Assessing the role of undetected colonization and isolation precautions in reducing Methicillin-Resistant Staphylococcus aureustransmission in intensive care units

    Screening and isolation are central components of hospital methicillin-resistant Staphylococcus aureus (MRSA) control policies. Their prevention of patient-to-patient spread depends on minimizing undetected and u...

    Theodore Kypraios, Philip D O'Neill, Susan S Huang in BMC Infectious Diseases (2010)