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  1. No Access

    Article

    CTLA-4 tail fusion enhances CAR-T antitumor immunity

    Chimeric antigen receptor (CAR)-T cells are powerful therapeutics; however, their efficacy is often hindered by critical hurdles. Here utilizing the endocytic feature of the cytotoxic T-lymphocyte-associated a...

    **aoyu Zhou, Hanbing Cao, Shao-Yu Fang, Ryan D. Chow, Kaiyuan Tang in Nature Immunology (2023)

  2. Article

    Polyvalent mRNA vaccination elicited potent immune response to monkeypox virus surface antigens

    Zhenhao Fang, Valter S. Monteiro, Paul A. Renauer, **ngbo Shang in Cell Research (2023)

  3. Article

    Open Access

    Multiparameter analysis of timelapse imaging reveals kinetics of megakaryocytic erythroid progenitor clonal expansion and differentiation

    Single-cell assays have enriched our understanding of hematopoiesis and, more generally, stem and progenitor cell biology. However, these single-end-point approaches provide only a static snapshot of the state...

    Vanessa M. Scanlon, Evrett N. Thompson, Betty R. Lawton in Scientific Reports (2022)

  4. Article

    Open Access

    Computation and visualization of cell–cell signaling topologies in single-cell systems data using Connectome

    Single-cell RNA-sequencing data has revolutionized our ability to understand of the patterns of cell–cell and ligand–receptor connectivity that influence the function of tissues and organs. However, the quanti...

    Micha Sam Brickman Raredon, Junchen Yang, James Garritano, Meng Wang in Scientific Reports (2022)

  5. Article

    Author Correction: Evolution of placental invasion and cancer metastasis are causally linked

    An amendment to this paper has been published and can be accessed via a link at the top of the paper.

    Kshitiz, Junaid Afzal, Jamie D. Maziarz, Archer Hamidzadeh in Nature Ecology & Evolution (2020)

  6. No Access

    Article

    Evolution of placental invasion and cancer metastasis are causally linked

    Among mammals, placental invasion is correlated with vulnerability to malignancy. Animals with more invasive placentation (for example, humans) are more vulnerable to malignancy. To explain this correlation, w...

    Kshitiz, Junaid Afzal, Jamie D. Maziarz, Archer Hamidzadeh in Nature Ecology & Evolution (2019)

  7. No Access

    Article

    A microphysiological model of the bronchial airways reveals the interplay of mechanical and biochemical signals in bronchospasm

    In asthma, the contraction of the airway smooth muscle and the subsequent decrease in airflow involve a poorly understood set of mechanical and biochemical events. Organ-level and molecular-scale models of the...

    Onur Kilic, Arum Yoon, Sagar R. Shah, Hwan Mee Yong in Nature Biomedical Engineering (2019)

  8. Article

    Open Access

    Switch-like enhancement of epithelial-mesenchymal transition by YAP through feedback regulation of WT1 and Rho-family GTPases

    Collective cell migration occurs in many patho-physiological states, including wound healing and invasive cancer growth. The integrity of the expanding epithelial sheets depends on extracellular cues, includin...

    **Seok Park, Deok-Ho Kim, Sagar R. Shah, Hong-Nam Kim, Kshitiz in Nature Communications (2019)

  9. Article

    Open Access

    Self-induced mechanical stress can trigger biofilm formation in uropathogenic Escherichia coli

    Bacterial biofilms represent an important medical problem; however, the mechanisms of the onset of biofilm formation are poorly understood. Here, using new controlled methods allowing high-throughput and repro...

    Eric K. Chu, Onur Kilic, Hojung Cho, Alex Groisman in Nature Communications (2018)

  10. Article

    Open Access

    Biomechanical interplay between anisotropic re-organization of cells and the surrounding matrix underlies transition to invasive cancer spread

    The root cause of cancer mortality and morbidity is the metastatic spread of the primary tumor, but underlying mechanisms remain elusive. Here we investigate biomechanical interactions that may accompany invas...

    Deok-Ho Kim, Andrew J. Ewald, **Seok Park, Kshitiz, Moonkyu Kwak in Scientific Reports (2018)

  11. No Access

    Article

    Directed migration of cancer cells guided by the graded texture of the underlying matrix

    Living cells and the extracellular matrix (ECM) can exhibit complex interactions that define key developmental, physiological and pathological processes. Here, we report a new type of directed migration—which ...

    **Seok Park, Deok-Ho Kim, Hong-Nam Kim, Chiaochun Joanne Wang in Nature Materials (2016)

  12. Article

    Mechanics of Microenvironment as Instructive Cues Guiding Stem Cell Behavior

    Stem cells reside in a complex milieu during development, or in adult tissues, as well as in culture conditions. Their decision to differentiate, self-renew, or migrate is a result of an integrated response to...

    Kshitiz, Junaid Afzal, Hao Chang, Ruchi Goyal, Andre Levchenko in Current Stem Cell Reports (2016)

  13. No Access

    Article

    Interplay between chemotaxis and contact inhibition of locomotion determines exploratory cell migration

    Directed cell migration in native environments is influenced by multiple migratory cues. These cues may include simultaneously occurring attractive soluble growth factor gradients and repulsive effects arising...

    Benjamin Lin, Taofei Yin, Yi I. Wu, Takanari Inoue in Nature Communications (2015)

  14. No Access

    Article

    Modeling Intercellular Transfer of Biomolecules Through Tunneling Nanotubes

    Tunneling nanotubes (TNTs) have previosly been observed as long and thin transient structures forming between cells and intercellular protein transfer through them has been experimentally verified. It is hypot...

    Yasir Suhail, Kshitiz, Justin Lee, Mark Walker in Bulletin of Mathematical Biology (2013)

  15. No Access

    Article

    Chemically inducible diffusion trap at cilia reveals molecular sieve–like barrier

    Chemically inducible diffusion trap at cilia (CIDTc), a method to trap proteins in the cilia, was applied to study the kinetics of protein accumulation and reveal a molecular sieve at the ciliary base. CIDTc c...

    Yu-Chun Lin, Pawel Niewiadomski, Benjamin Lin, Hideki Nakamura in Nature Chemical Biology (2013)

  16. No Access

    Chapter and Conference Paper

    Stem Cell Differentiation as a Renewal-Reward Process: Predictions and Validation in the Colonic Crypt

    Stem cells serve as persistent reservoirs for replenishment of rapidly renewing tissues, frequently also ensuring that the correct tissue morphology is maintained. This process is inherently stochastic due to ...

    Kiran Gireesan Vanaja, Andrew P. Feinberg, Andre Levchenko in Advances in Systems Biology (2012)

  17. No Access

    Article

    Signaling diversity of PKA achieved via a Ca2+-cAMP-PKA oscillatory circuit

    PKA initiates and modulates the frequency of oscillations of Ca2+ and cAMP in insulin-secreting cells and itself oscillates to provide spatiotemporal control of downstream signals on the basis of diverse inputs. ...

    Qiang Ni, Ambhighainath Ganesan, Nwe-Nwe Aye-Han, **nxin Gao in Nature Chemical Biology (2011)

  18. No Access

    Chapter

    Using Lab-on-a-Chip Technologies for Stem Cell Biology

    The introduction of microtechnology and microfluidic platforms for cell culture can dramatically enhance the pace of stem cell research. With the use of microfluidic-based techniques, extracellular microenviro...

    Kshitiz Gupta, Deok-Ho Kim, David Ellison in Stem Cells & Regenerative Medicine (2011)

  19. No Access

    Article

    Subcellular-resolution delivery of a cytokine through precisely manipulated nanowires

    Precise delivery of molecular doses of biologically active chemicals to a pre-specified single cell among many, or a specific subcellular location, is still a largely unmet challenge hampering our understandin...

    Donglei Fan, Zhizhong Yin, Raymond Cheong, Frank Q. Zhu in Nature Nanotechnology (2010)

  20. No Access

    Chapter and Conference Paper

    A Scalable and Integrative System for Pathway Bioinformatics and Systems Biology

    Motivation: Progress in systems biology depends on develo** scalable informatics tools to predictively model, visualize, and flexibly store information about complex biological systems. Scalability of these ...

    Behnam Compani, Trent Su, Ivan Chang, Jianlin Cheng in Advances in Computational Biology (2010)

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