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Identification and expression analysis of Jr4CLs gene family based on transcriptome and physiological data in walnut (Juglans regia)

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  1. Article

    Open Access

    Bacterial c-di-GMP triggers metamorphosis of mussel larvae through a STING receptor

    Bacteria induced metamorphosis observed in nearly all marine invertebrates. However, the mechanism of bacteria regulating the larvae-juvenile metamorphosis remains unknown. Here, we test the hypothesis that c-...

    **ao-Meng Hu, Lihua Peng, Yuyi Wang, Fan Ma, Yu Tao in npj Biofilms and Microbiomes (2024)

  2. Article

    Open Access

    Genome-wide identification and expression analysis of the SPL transcription factor family and its response to abiotic stress in Pisum sativum L

    Squamous promoter binding protein-like (SPL) genes encode plant-specific transcription factors (TFs) that play essential roles in modulating plant growth, development, and stress response. Pea (Pisum sativum L.) ...

    Long Li, Jian bo Xu, Zhi wen Zhu, Rui Ma, **ao zong Wu, Yu ke Geng in BMC Genomics (2024)

  3. Article

    Open Access

    Dynamic changes in RNA m6A and 5 hmC influence gene expression programs during macrophage differentiation and polarisation

    RNA modifications are essential for the establishment of cellular identity. Although increasing evidence indicates that RNA modifications regulate the innate immune response, their role in monocyte-to-macropha...

    Natalia Pinello, Renhua Song, Quintin Lee in Cellular and Molecular Life Sciences (2024)

  4. Article

    Open Access

    Transcription factor ATMIN facilitates chemoresistance in nasopharyngeal carcinoma

    Despite that the docectaxel-cisplatin-5-fluorouracil (TPF) induction chemotherapy has greatly improved patients’ survival and became the first-line treatment for advanced nasopharyngeal carcinoma (NPC), not al...

    Xue-Liang Fang, Qing-Jie Li, Jia-Yi Lin, Cheng-Long Huang in Cell Death & Disease (2024)

  5. Article

    Open Access

    XrvB regulates the type III secretion system by directly repressing hrpG transcription in Xanthomonas oryzae pv. oryzicola

    Xrv proteins are a group of regulators in Xanthomonas spp., belonging to the histone-like nucleoid-structuring (H-NS) proteins of Gram-negative bacteria. The rice bacterial leaf streak pathogen Xanthomonas oryzae

    Jian-Ling Peng, Jia-Feng Shi, Zeng-Feng Ma, **ao-Long Zhou in Phytopathology Research (2023)

  6. Article

    Open Access

    Diacylglycerol lipase alpha promotes hepatocellular carcinoma progression and induces lenvatinib resistance by enhancing YAP activity

    As an important hydrolytic enzyme that yields 2-AG and free fatty acids, diacylglycerol lipase alpha (DAGLA) is involved in exacerbating malignant phenotypes and cancer progression, but the role of the DAGLA/2...

    Yu-Chuan Yan, Guang-**ao Meng, Chun-Cheng Yang, Ya-Fei Yang in Cell Death & Disease (2023)

  7. Article

    Open Access

    Pan-cancer surveys indicate cell cycle-related roles of primate-specific genes in tumors and embryonic cerebrum

    Despite having been extensively studied, it remains largely unclear why humans bear a particularly high risk of cancer. The antagonistic pleiotropy hypothesis predicts that primate-specific genes (PSGs) tend t...

    Chenyu Ma, Chunyan Li, Hui**g Ma, Daqi Yu, Yufei Zhang, Dan Zhang in Genome Biology (2022)

  8. Article

    Fungal diversity notes 1512–1610: taxonomic and phylogenetic contributions on genera and species of fungal taxa

    This article is the 14th in the Fungal Diversity Notes series, wherein we report 98 taxa distributed in two phyla, seven classes, 26 orders and 50 families which are described and illustrated. Taxa in this stu...

    Ruvishika S. Jayawardena, Kevin D. Hyde, Song Wang, Ya-Ru Sun in Fungal Diversity (2022)

  9. Article

    Open Access

    DNA damage-induced paraspeckle formation enhances DNA repair and tumor radioresistance by recruiting ribosomal protein P0

    Paraspeckles are mammal-specific membraneless nuclear bodies that participate in various biological processes. NONO, a central paraspeckle component, has been shown to play pivotal roles in DNA double-strand b...

    Yun-Long Wang, Wan-Wen Zhao, Shao-Mei Bai, Yan Ma, **n-Ke Yin in Cell Death & Disease (2022)

  10. Article

    Open Access

    Comparative 3D genome architecture in vertebrates

    The three-dimensional (3D) architecture of the genome has a highly ordered and hierarchical nature, which influences the regulation of essential nuclear processes at the basis of gene expression, such as gene ...

    Diyan Li, Mengnan He, Qianzi Tang, Shilin Tian, Jiaman Zhang, Yan Li in BMC Biology (2022)

  11. Article

    Open Access

    ATG7-enhanced impaired autophagy exacerbates acute pancreatitis by promoting regulated necrosis via the miR-30b-5p/CAMKII pathway

    The present study was performed to explore whether and how impaired autophagy could modulate calcium/calmodulin-dependent protein kinase II (CAMKII)-regulated necrosis in the pathogenesis of acute pancreatitis...

    Liang Ji, Zhi-hong Wang, Yu-hua Zhang, Yi Zhou, De-sheng Tang in Cell Death & Disease (2022)

  12. Article

    Open Access

    Doxorubicin-induced novel circRNA_0004674 facilitates osteosarcoma progression and chemoresistance by upregulating MCL1 through miR-142-5p

    Accumulating evidence has shown that circular RNA (circRNA) dysregulation is involved in various types of cancer, including osteosarcoma (OS). Nevertheless, the role and mechanism of circRNAs in OS progression...

    **ao-Long Ma, Tai-Cheng Zhan, Jian-** Hu, Chun-Lin Zhang in Cell Death Discovery (2021)

  13. Article

    Open Access

    Wolfberry genomes and the evolution of Lycium (Solanaceae)

    Wolfberry Lycium, an economically important genus of the Solanaceae family, contains approximately 80 species and shows a fragmented distribution pattern among the Northern and Southern Hemispheres. Although seve...

    You-Long Cao, Yan-long Li, Yun-Fang Fan, Zhen Li, Kouki Yoshida in Communications Biology (2021)

  14. Article

    Open Access

    (+)-Clausenamide protects against drug-induced liver injury by inhibiting hepatocyte ferroptosis

    Drug-induced liver injury is the major cause of acute liver failure. However, the underlying mechanisms seem to be multifaceted and remain poorly understood, resulting in few effective therapies. Here, we repo...

    Min Wang, Chun-Yu Liu, Tian Wang, Hong-Min Yu, Shu-Hua Ouyang in Cell Death & Disease (2020)

  15. Article

    Open Access

    Cdc42 subcellular relocation in response to VEGF/NRP1 engagement is associated with the poor prognosis of colorectal cancer

    Microscopic indications of malignancy and hallmark molecules of cancer are pivotal to determining cancer patient prognosis and subsequent medical intervention. Here, we found that compared to apical expression...

    Li-li Ma, Li-li Guo, Yang Luo, Guang-long Liu, Yan Lei in Cell Death & Disease (2020)

  16. Article

    Open Access

    Pten-mediated Gsk3β modulates the naïve pluripotency maintenance in embryonic stem cells

    Mouse embryonic stem cells (ESCs) are isolated from the inner cell mass of blastocysts, and they exist in different states of pluripotency—naïve and primed states. Pten is a well-known tumor suppressor. Here, we ...

    Wuming Wang, Gang Lu, **anwei Su, Chengcheng Tang, Hongjian Li in Cell Death & Disease (2020)

  17. Article

    Open Access

    The hornwort genome and early land plant evolution

    Hornworts, liverworts and mosses are three early diverging clades of land plants, and together comprise the bryophytes. Here, we report the draft genome sequence of the hornwort Anthoceros angustus. Phylogenomic ...

    Jian Zhang, **n-**ng Fu, Rui-Qi Li, **ang Zhao, Yang Liu, Ming-He Li in Nature Plants (2020)

  18. Article

    Open Access

    Root plasticity and Pi recycling within plants contribute to low-P tolerance in Tibetan wild barley

    Barley is a low phosphorus (P) demand cereal crop. Tibetan wild barley, as a progenitor of cultivated barley, has revealed outstanding ability of tolerance to low-P stress. However, the underlying mechanisms o...

    Lizhi Long, **nyi Ma, Lingzhen Ye, Jianbin Zeng, Guang Chen in BMC Plant Biology (2019)

  19. Article

    Open Access

    Molecular hydrogen suppresses glioblastoma growth via inducing the glioma stem-like cell differentiation

    Glioblastoma (GBM) is the most common type of primary malignant brain tumor. Molecular hydrogen has been considered a preventive and therapeutic medical gas in many diseases including cancer. In our study, we ...

    Meng-yu Liu, Fei **e, Yan Zhang, Ting-ting Wang in Stem Cell Research & Therapy (2019)

  20. Article

    Open Access

    Effect of lipid metabolism disorder on liver function in patients with malignant tumors after chemotherapy: a case-control study

    This study aims to investigate the effect of lipid metabolism disorder on liver function in patients with malignant tumors after chemotherapy.

    Yan Sun, Nie Zhang, Yun-Long Ding, Li-Jiang Yu, Jun Cai in Lipids in Health and Disease (2019)

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