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  1. No Access

    Chapter

    Plant System Biology

    Modern systems biology emerged owing to the necessity to translate the massive amounts of data produced by genome-scale investigations into physiologically relevant insights. Given the large datasets produced ...

    Imran Ul Haq, Maria Babar, Hayssam Mohamed Ali in Trends in Plant Biotechnology (2024)

  2. Chapter

    Genome Sequence-Based Features of Wheat Genetic Diversity

    Common wheat is a hexaploid species crop that is widely recognized as an important staple food crop. The establishment of a gold standard reference genome sequences of the well-studied CHINESE SPRING, and its ...

    Xueyong Zhang, Rudi Appels in The Wheat Genome (2024)

  3. No Access

    Chapter

    Bioinformatics and Computational Biology

    Bioinformatics and computational biology integrate computer science, molecular biology, statistics, mathematics, and engineering to collect, manage, and analyze biological data. This interdisciplinary synergy ...

    Muhammad Amjad Ali, Adil Zahoor, Zeenat Niaz in Trends in Plant Biotechnology (2024)

  4. No Access

    Chapter

    The Application of Genome Editing Technologies in Soybean (Glycine max L.) for Abiotic Stress Tolerance

    Soybean (Glycine max L.) is one of the five major cultivated crops that are important in the world, and it is also a major source of oil and protein for humans and livestock. But its seed yield is relatively low ...

    Xuanbo Zhong, Longlong Hu, Guixiang Tang in Plant Genome Editing Technologies (2024)

  5. No Access

    Chapter

    The Use of Gene Editing Technology to Introduce Targeted Modifications in Woody Plants

    Genome editing technologies help in precise target genome modifications. Various powerful editing tools such as transcription activator-like effector nucleases (TALENs), zinc-finger nucleases (ZFNs), clustered...

    Samim Dullah, Rahul Gogoi, Anshu, Priyadarshini Deka in Plant Genome Editing Technologies (2024)

  6. Chapter

    Genome Sequences from Diploids and Wild Relatives of Wheat for Comparative Genomics and Alien Introgressions

    Bread wheat is an important food source worldwide, contributing ~20% of the caloric intake per person worldwide. Due to a domestication bottleneck and highly selective breeding for key traits, modern wheat cul...

    Adam Schoen, Gautam Saripalli, Seyedali Hosseinirad, Parva Kumar Sharma in The Wheat Genome (2024)

  7. Chapter

    Gene Flow Between Tetraploid and Hexaploid Wheat for Breeding Innovation

    Durum and bread wheat are two related species with different ploidy levels but a high similarity between the common A and B genomes. This feature, which allows a continuous gene flow between the two species, c...

    Elisabetta Mazzucotelli, Anna Maria Mastrangelo, Francesca Desiderio in The Wheat Genome (2024)

  8. Chapter

    Wheat Sequencing: The Pan-Genome and Opportunities for Accelerating Breeding

    Wheat is a crucial crop globally, with widespread cultivation and significant economic importance. To ensure food security amidst the increasing human population and new production challenges, such as climate ...

    Amidou N’Diaye, Sean Walkowiak, Curtis Pozniak in The Wheat Genome (2024)

  9. No Access

    Chapter

    Plant Responses to Hypoxia Stress: Signalling Cascades and Regulatory Mechanisms

    Floods leading to waterlogged soil and submerged plants are one of the major abiotic stresses affecting plants across the globe. Extended time of waterlogged soil leads to hypoxic conditions and, in some cases...

    Prashasti Pandey, Deepak Kumar in Stress Biology in Photosynthetic Organisms (2024)

  10. No Access

    Chapter

    Population Genomics of Phaseolus spp.: A Domestication Hotspot

    The genus Phaseolus includes five domesticated species. Collectively, Phaseolus beans are produced across all inhabited continents under a variety of environments, mainly for dry beans but also green pods. Buildi...

    Travis A. Parker, Paul Gepts in Population Genomics: Crop Plants (2024)

  11. No Access

    Chapter

    Coalescent Models of Demographic History: Application to Plant Domestication

    A detailed understanding of the origins of domesticated species is important for many disciplines. Recent advances in this field have been made with the use of genome-wide polymorphisms and improved statistica...

    Olivier François, Philippe Cubry, Concetta Burgarella in Population Genomics: Crop Plants (2024)

  12. No Access

    Chapter

    Population Genomics of Sweet Watermelon

    Sweet watermelon (Citrullus lanatus var. vulgaris) belongs to the genus Citrullus Schrad and has six known species including Citrullus naudinianus, C. colocynthis, C. ecirrhosus, C. rehmii, C. amarus, and C. muco...

    Padma Nimmakayala, Purushothaman Natarajan in Population Genomics: Crop Plants (2024)

  13. No Access

    Chapter

    Abiotic Stress-Induced Epigenetic Modifications in Plants

    Plants are constantly exposed to various unfavourable environmental conditions, which drive them to adopt several survival strategies including epigenetic modifications. These modifications correlate with the ...

    Preeti Patel, Archana Prasad in Stress Biology in Photosynthetic Organisms (2024)

  14. No Access

    Chapter

    Genomics of Plant Gene Banks: Prospects for Managing and Delivering Diversity in the Digital Age

    Gene bank collections are at a pivotal point in their history. We review their development and explain how their role is changing with new technologies in computation and analytics and the widespread applicati...

    Chris Richards in Population Genomics: Crop Plants (2024)

  15. No Access

    Chapter

    Population Genomics of Pearl Millet

    Pearl millet [Pennisetum glaucum (L.) R. Br., syn. Cenchrus americanus (L.) Morrone)], one of the major staple food for around 100 million people across Africa and India, is a so-called “orphan” crop. Recently, s...

    Ndjido Ardo Kane, Cécile Berthouly-Salazar in Population Genomics: Crop Plants (2024)

  16. No Access

    Chapter

    Population Genomics and Molecular Breeding of Sorghum

    Sorghum bicolor (L.) Moench is a multipurpose crop worldwide, and it is used as a source of food, fodder, feed, and fuel. It is currently considered a promising alternative crop for generating bioenergy from suga...

    Arthur Bernardeli, Cynthia Maria Borges Damasceno in Population Genomics: Crop Plants (2024)

  17. No Access

    Chapter

    Cellular Responses Against Abiotic Stress-Induced Reactive Oxygen Species

    This chapter explores molecular mechanisms underlying behind molecular pathways triggered by excessive reactive oxygen species (ROS) production due to stress signalling. Abiotic stressors that disrupt redox eq...

    Deepankar Mondal, Dhananjay Shukla in Stress Biology in Photosynthetic Organisms (2024)

  18. No Access

    Chapter

    Population Genomics and Genomics-Assisted Trait Improvement in Tea (Camellia sinensis (L.) O. Kuntze)

    “Tea” is undoubtedly one of the most widely consumed beverage processed from young shoots of tea [Camellia sinensis (L.) O. Kuntze] plant. The popularity of tea is attributed to its taste, aroma, and multiple hea...

    Tony Maritim, Romit Seth, Ashlesha Holkar in Population Genomics: Crop Plants (2024)

  19. Chapter

    Population Genomics Along With Quantitative Genetics Provides a More Efficient Valorization of Crop Plant Genetic Diversity in Breeding and Pre-breeding Programs

    The breeding efforts of the twentieth century contributed to large increases in yield but selection may have increased vulnerability to environmental perturbations. In that context, there is a growing demand f...

    Peter Civan, Renaud Rincent, Alice Danguy-Des-Deserts in Population Genomics: Crop Plants (2024)

  20. No Access

    Chapter

    Enhancing Crop Breeding Using Population Genomics Approaches

    The use of genetic information to predict the value of individuals in plant breeding populations began about 40 years ago. The original paradigm was to identify genomic regions with outsize influence on a trai...

    Ryan J. Andres, Jeffrey C. Dunne, Luis Fernando Samayoa in Population Genomics: Crop Plants (2024)

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