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Showing 1-20 of 83 results
  1. EasySMPC: a simple but powerful no-code tool for practical secure multiparty computation

    Background

    Modern biomedical research is data-driven and relies heavily on the re-use and sharing of data. Biomedical data, however, is subject to...

    Felix Nikolaus Wirth, Tobias Kussel, ... Fabian Prasser in BMC Bioinformatics
    Article Open access 09 December 2022
  2. Sequre: a high-performance framework for secure multiparty computation enables biomedical data sharing

    Secure multiparty computation (MPC) is a cryptographic tool that allows computation on top of sensitive biomedical data without revealing private...

    Haris Smajlović, Ariya Shajii, ... Ibrahim Numanagić in Genome Biology
    Article Open access 11 January 2023
  3. SVAT: Secure outsourcing of variant annotation and genotype aggregation

    Background

    Sequencing of thousands of samples provides genetic variants with allele frequencies spanning a very large spectrum and gives invaluable...

    Miran Kim, Su Wang, ... Arif Harmanci in BMC Bioinformatics
    Article Open access 01 October 2022
  4. MPCDDI: A Secure Multiparty Computation-Based Deep Learning Framework for Drug-Drug Interaction Predictions

    Drug-drug interaction (DDI) is a key concern in drug development and pharmacovigilance. It is important to improve DDI predictions by integrating...
    **a **ao, **aoqi Wang, ... Shaoliang Peng in Bioinformatics Research and Applications
    Conference paper 2022
  5. Secure tumor classification by shallow neural network using homomorphic encryption

    Background

    Disclosure of patients’ genetic information in the process of applying machine learning techniques for tumor classification hinders the...

    Seungwan Hong, Jai Hyun Park, ... Jung Hee Cheon in BMC Genomics
    Article Open access 09 April 2022
  6. PP-DDP: a privacy-preserving outsourcing framework for solving the double digest problem

    Background

    As one of the fundamental problems in bioinformatics, the double digest problem (DDP) focuses on reordering genetic fragments in a proper...

    **gwen Suo, Lize Gu, ... Licheng Wang in BMC Bioinformatics
    Article Open access 31 January 2023
  7. Efficient privacy-preserving variable-length substring match for genome sequence

    The development of a privacy-preserving technology is important for accelerating genome data sharing. This study proposes an algorithm that securely...

    Yoshiki Nakagawa, Satsuya Ohata, Kana Shimizu in Algorithms for Molecular Biology
    Article Open access 26 April 2022
  8. COLLAGENE enables privacy-aware federated and collaborative genomic data analysis

    Growing regulatory requirements set barriers around genetic data sharing and collaborations. Moreover, existing privacy-aware paradigms are...

    Wentao Li, Miran Kim, ... Arif Harmanci in Genome Biology
    Article Open access 11 September 2023
  9. Privacy-Preserving Analytics, Processing and Data Management

    Typically, data cannot be shared among competing organizations due to confidentiality or regulatory restrictions. We present several technological...
    Kalmer Keerup, Dan Bogdanov, ... Per Gunnar Auran in Big Data in Bioeconomy
    Chapter Open access 2021
  10. Legal aspects of privacy-enhancing technologies in genome-wide association studies and their impact on performance and feasibility

    Genomic data holds huge potential for medical progress but requires strict safety measures due to its sensitive nature to comply with data protection...

    Alissa Brauneck, Louisa Schmalhorst, ... Gabriele Buchholtz in Genome Biology
    Article Open access 13 June 2024
  11. Edge, Fog, and Cloud Against Disease: The Potential of High-Performance Cloud Computing for Pharma Drug Discovery

    The high-performance computing (HPC) platform for large-scale drug discovery simulation demands significant investment in speciality hardware,...
    Protocol 2024
  12. GPU Cloud Architectures for Bioinformatic Applications

    The world of computing is constantly evolving. The trends that are sha** today’s applications are Cloud computing and GPU computing. These...
    Antonio Maciá-Lillo, Tamai Ramírez, ... José-Luis Sánchez-Romero in Bioinformatics and Biomedical Engineering
    Conference paper 2023
  13. Privacy-preserving integration of multiple institutional data for single-cell type identification with scPrivacy

    The rapid accumulation of large-scale single-cell RNA-seq datasets from multiple institutions presents remarkable opportunities for automatically...

    Shaoqi Chen, Bin Duan, ... Qi Liu in Science China Life Sciences
    Article 15 December 2022
  14. sPLINK: a hybrid federated tool as a robust alternative to meta-analysis in genome-wide association studies

    Meta-analysis has been established as an effective approach to combining summary statistics of several genome-wide association studies (GWAS)....

    Reza Nasirigerdeh, Reihaneh Torkzadehmahani, ... Jan Baumbach in Genome Biology
    Article Open access 24 January 2022
  15. Flimma: a federated and privacy-aware tool for differential gene expression analysis

    Aggregating transcriptomics data across hospitals can increase sensitivity and robustness of differential expression analyses, yielding deeper...

    Olga Zolotareva, Reza Nasirigerdeh, ... Jan Baumbach in Genome Biology
    Article Open access 14 December 2021
  16. Aggregation Tree Statistical Computing Based on Functional Encryption

    The medical monitoring system is widely used. In the medical monitoring system, each user only possesses one piece of data logging that participates...

    Guangli **ang, Dengjia Wang, ... Ankang Li in Wuhan University Journal of Natural Sciences
    Article 20 March 2019
  17. ID-Based Public Auditing Protocol for Cloud Storage Data Integrity Checking with Strengthened Authentication and Security

    Cloud storage service reduces the burden of data users by storing users’ data files in the cloud. But, the files might be modified in the cloud. So,...

    Hong Jiang, Mingming **e, ... Lin Si in Wuhan University Journal of Natural Sciences
    Article 18 July 2018
  18. Towards global traceability for sustainable cephalopod seafood

    Cephalopods are harvested in increasingly large quantities but understanding how to control and manage their stocks, and tracking the routes of the...

    Ian G. Gleadall, Hassan Moustahfid, ... Tadanori Yamaguchi in Marine Biology
    Article 30 December 2023
  19. Revisiting Rwanda’s agricultural intensification policy: benefits of embracing farmer heterogeneity and crop-livestock integration strategies

    The government of Rwanda is promoting agricultural intensification focused on the production of a small number of targeted commodities as a central...

    Sung Kyu Kim, Fiona Marshall, Neil M. Dawson in Food Security
    Article Open access 31 January 2022
  20. Digital Farming and Field Robotics: Internet of Things, Cloud Computing, and Big Data

    In recent years, agriculture has been facing an increasingly urgent demand to increase food production while reducing the use of various farming...
    Dimitrios S. Paraforos, Hans W. Griepentrog in Fundamentals of Agricultural and Field Robotics
    Chapter 2021
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