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  1. Forster Resonance Energy Transfer (FRET) to Visualize Protein–Protein Interactions in the Plant Cell

    Forster resonance energy transfer (FRET) is an efficient method to visualize the protein–protein interaction in living cells. This technique is based...
    Prabu Gnanasekaran, Hanu R. Pappu in Protein-Protein Interactions
    Protocol 2023
  2. Measuring Protein–Protein Interactions in Cells using Nanoluciferase Bioluminescence Resonance Energy Transfer (NanoBRET) Assay

    Protein–protein interactions (PPIsProtein-protein interactions (PPIs)) are increasingly recognized for their roles in functional cellular networks...
    Magdalena M. Szewczyk, Dominic D. G. Owens, Dalia Barsyte-Lovejoy in Chemogenomics
    Protocol 2023
  3. Cross-protein transfer learning substantially improves disease variant prediction

    Background

    Genetic variation in the human genome is a major determinant of individual disease risk, but the vast majority of missense variants have...

    Milind Jagota, Chengzhong Ye, ... Yun S. Song in Genome Biology
    Article Open access 07 August 2023
  4. KT-AMP: Enhancing Antimicrobial Peptide Functions Prediction Through Knowledge Transfer on Protein Language Model

    As the overuse of antibiotics enhances the resistance of various microbial pathogens to antibiotics, antimicrobial peptides (AMPs) have the potential...
    **ao Liang, Haochen Zhao, Jianxin Wang in Bioinformatics Research and Applications
    Conference paper 2024
  5. Protein–Protein Interactions: Co-immunoprecipitation

    Proteins often do not function as single substances but rather as team players in a dynamic network. Growing evidences show that protein–protein...
    Jer-Sheng Lin, Jemal Ali, Erh-Min Lai in Bacterial Secretion Systems
    Protocol 2024
  6. Lipid Transfer Protein Genes Are Differently Expressed in Rat Soleus Muscle at Early and Later Periods of Muscle Disuse

    Abstract

    This work reports analysis of lipid transfer protein (LTPs) mRNA levels in rat soleus muscle after 12-h and 14-day hindlimb suspension (HS)....

    I. G. Bryndina, V. V. Skurygin, V. V. Protopopov in Journal of Evolutionary Biochemistry and Physiology
    Article 01 March 2024
  7. Resonance Energy Transfer

    One way that an excited molecule can return to the ground state is to transfer the excitation energy to another molecule. This process, resonance...
    William W. Parson, Clemens Burda in Modern Optical Spectroscopy
    Chapter 2023
  8. Studying Protein–Protein Interactions at Plasmodesmata by Measuring Förster Resonance Energy Transfer

    Plasmodesmata (PD) provide interconnectivity between plant cells to enable the intercellular transport and communication that is requisite to...
    Patrick Blümke, Vicky Howe, Rüdiger Simon in Plasmodesmata
    Protocol 2022
  9. Measuring Protein-Protein Interactions of Melatonin Receptors by Bioluminescence Resonance Energy Transfer (BRET)

    The melatonin receptor subfamily belongs to the G protein-coupled receptor superfamily and consists of three members in mammals, MT1, MT2, and GPR50....
    Atsuro Oishi, Ralf Jockers in Melatonin
    Protocol 2022
  10. The revealing of a novel lipid transfer protein lineage in green algae

    Background

    Non-specific lipid transfer proteins (nsLTPs) are a group of small and basic proteins that can bind and transfer various lipid molecules to...

    Ming-Der Huang, Chin-Wei Wu, ... Hsin-Yang Chang in BMC Plant Biology
    Article Open access 11 January 2023
  11. Protein–Protein Interaction: Bacterial Two Hybrid

    The bacterial two-hybridBacterial two-hybrid (BACTH, for “Bacterial Adenylate Cyclase-based Two-Hybrid”) system is a simple and fast genetic approach...
    Gouzel Karimova, Emilie Gauliard, ... Daniel Ladant in Bacterial Secretion Systems
    Protocol 2024
  12. A multitask transfer learning framework for the prediction of virus-human protein–protein interactions

    Background

    Viral infections are causing significant morbidity and mortality worldwide. Understanding the interaction patterns between a particular...

    Thi Ngan Dong, Graham Brogden, ... Megha Khosla in BMC Bioinformatics
    Article Open access 27 November 2021
  13. Protein–Protein Interaction: Tandem Affinity Purification in Bacteria

    The discovery of protein–protein interaction networks can lead to the unveiling of protein complex(es) forming cellular machinerie(s) or reveal...
    Julie P. M. Viala, Emmanuelle Bouveret in Bacterial Secretion Systems
    Protocol 2024
  14. Protein–Protein Interactions: Oxidative Bacterial Two Hybrid

    Protein–protein interaction studies are essential to understand how proteins organize themselves into interaction networks and thus influence...
    Callypso Pellegri, Emmanuelle Bouveret, Laetitia Houot in Bacterial Secretion Systems
    Protocol 2024
  15. Gene Transfer

    In addition to vertical gene transfer between generations, microbes often transfer their genes horizontally. Horizontal gene transfer contributes...
    Chapter 2023
  16. Protein-Protein Binding Kinetics by Biolayer Interferometry

    The specific kinetics and thermodynamics of protein-protein interactions underlie the molecular mechanisms of cellular functions; hence the...
    Jorge Santos-López, Sara Gómez, ... M. Cristina Vega in Advanced Technologies for Protein Complex Production and Characterization
    Chapter 2024
  17. ANKFY1 bridges ATG2A-mediated lipid transfer from endosomes to phagophores

    Macroautophagy is a process that cells engulf cytosolic materials by autophagosomes and deliver them to lysosomes for degradation. The biogenesis of...

    Bin Wei, Yuhui Fu, ... Qing Zhong in Cell Discovery
    Article Open access 16 April 2024
  18. Protein–Protein Interactions: Yeast Two Hybrid

    The yeast two-hybridYeast two-hybrid (Y2H) systemTwo-hybrid system is a powerful and commonly used genetic tool to investigate the interaction...
    Jer-Sheng Lin, Erh-Min Lai in Bacterial Secretion Systems
    Protocol 2024
  19. HMGB1 promotes mitochondrial transfer between hepatocellular carcinoma cells through RHOT1 and RAC1 under hypoxia

    Mitochondrial transfer plays an important role in various diseases, and many mitochondrial biological functions can be regulated by HMGB1. To explore...

    Mengjia **g, **aofeng **ong, ... Wei Yan in Cell Death & Disease
    Article Open access 20 February 2024
  20. Protein language models can capture protein quaternary state

    Background

    Determining a protein’s quaternary state, i.e. the number of monomers in a functional unit, is a critical step in protein...

    Orly Avraham, Tomer Tsaban, ... Ora Schueler-Furman in BMC Bioinformatics
    Article Open access 14 November 2023
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