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  1. Article

    Open Access

    Co-localization of antibiotic resistance genes is widespread in the infant gut microbiome and associates with an immature gut microbial composition

    In environmental bacteria, the selective advantage of antibiotic resistance genes (ARGs) can be increased through co-localization with genes such as other ARGs, biocide resistance genes, metal resistance genes...

    Xuanji Li, Asker Brejnrod, Urvish Trivedi, Jakob Russel, Jonathan Thorsen in Microbiome (2024)

  2. Article

    Open Access

    Differential responses of the gut microbiome and resistome to antibiotic exposures in infants and adults

    Despite their crucial importance for human health, there is still relatively limited knowledge on how the gut resistome changes or responds to antibiotic treatment across ages, especially in the latter case. H...

    Xuanji Li, Asker Brejnrod, Jonathan Thorsen, Trine Zachariasen in Nature Communications (2023)

  3. Article

    Open Access

    The airway microbiota of neonates colonized with asthma-associated pathogenic bacteria

    Culture techniques have associated colonization with pathogenic bacteria in the airways of neonates with later risk of childhood asthma, whereas more recent studies utilizing sequencing techniques have shown t...

    Jonathan Thorsen, Xuan Ji Li, Shuang Peng, Rikke Bjersand Sunde in Nature Communications (2023)

  4. Article

    Open Access

    The develo** airway and gut microbiota in early life is influenced by age of older siblings

    Growing up with siblings has been linked to numerous health outcomes and is also an important determinant for the develo** microbiota. Nonetheless, research into the role of having siblings on the develo**...

    Emil Dalgaard Christensen, Mathis Hjort Hjelmsø, Jonathan Thorsen in Microbiome (2022)

  5. Article

    Open Access

    Biofilms can act as plasmid reserves in the absence of plasmid specific selection

    Plasmids facilitate rapid bacterial adaptation by shuttling a wide variety of beneficial traits across microbial communities. However, under non-selective conditions, maintaining a plasmid can be costly to the...

    Henriette Lyng Røder, Urvish Trivedi, Jakob Russel in npj Biofilms and Microbiomes (2021)

  6. Article

    Open Access

    Persistence and progression of staphylococcal infection in the presence of public goods

    Staphylococcus aureus is a prominent etiological agent of suppurative abscesses. In principle, abscess formation and purulent exudate are classical physiological features of healing and tissue repair. However, S....

    Urvish Trivedi, Cody Fell, Jonas S. Madsen, Jake Everett in npj Biofilms and Microbiomes (2020)

  7. Article

    Open Access

    Environmental sha** of the bacterial and fungal community in infant bed dust and correlations with the airway microbiota

    From early life, children are exposed to a multitude of environmental exposures, which may be of crucial importance for healthy development. Here, the environmental microbiota may be of particular interest as ...

    Shashank Gupta, Mathis H. Hjelmsø, Jenni Lehtimäki, Xuanji Li in Microbiome (2020)

  8. Article

    Open Access

    The microbiome of captive hamadryas baboons

    The hamadryas baboon (Papio hamadryas) is a highly social primate that lives in complex multilevel societies exhibiting a wide range of group behaviors akin to humans. In contrast to the widely studied human micr...

    Xuanji Li, Urvish Trivedi, Asker Daniel Brejnrod, Gisle Vestergaard in Animal Microbiome (2020)

  9. Article

    Open Access

    Amplicon sequencing provides more accurate microbiome information in healthy children compared to culturing

    Next-Generation Sequencing (NGS) of 16S rRNA gene is now one of the most widely used application to investigate the microbiota at any given body site in research. Since NGS is more sensitive than traditional c...

    Shashank Gupta, Martin S. Mortensen, Susanne Schjørring in Communications Biology (2019)

  10. No Access

    Article

    Pseudomonas aeruginosa biofilms perturb wound resolution and antibiotic tolerance in diabetic mice

    Diabetic patients are more susceptible to the development of chronic wounds than non-diabetics. The impaired healing properties of these wounds, which often develop debilitating bacterial infections, significa...

    Chase Watters, Katrina DeLeon, Urvish Trivedi in Medical Microbiology and Immunology (2013)