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  1. No Access

    Article

    Pleiotropy, epistasis and the genetic architecture of quantitative traits

    Pleiotropy (whereby one genetic polymorphism affects multiple traits) and epistasis (whereby non-linear interactions between genetic polymorphisms affect the same trait) are fundamental aspects of the genetic ...

    Trudy F. C. Mackay, Robert R. H. Anholt in Nature Reviews Genetics (2024)

  2. Article

    Open Access

    Pleiotropic fitness effects of the lncRNA Uhg4 in Drosophila melanogaster

    Long noncoding RNAs (lncRNAs) are a diverse class of RNAs that are critical for gene regulation, DNA repair, and splicing, and have been implicated in development, stress response, and cancer. However, the fun...

    Rebecca A. MacPherson, Vijay Shankar, Lakshmi T. Sunkara, Rachel C. Hannah in BMC Genomics (2022)

  3. Article

    Open Access

    Modulation of the Drosophila transcriptome by developmental exposure to alcohol

    Prenatal exposure to ethanol can cause fetal alcohol spectrum disorder (FASD), a prevalent, preventable pediatric disorder. Identifying genetic risk alleles for FASD is challenging since time, dose, and freque...

    Tatiana V. Morozova, Vijay Shankar, Rebecca A. MacPherson in BMC Genomics (2022)

  4. Article

    Open Access

    Ibrutinib as a potential therapeutic for cocaine use disorder

    Cocaine use presents a worldwide public health problem with high socioeconomic cost. No current pharmacologic treatments are available for cocaine use disorder (CUD) or cocaine toxicity. To explore pharmaceuti...

    Spencer B. Huggett, Jeffrey S. Hatfield, Joshua D. Walters in Translational Psychiatry (2021)

  5. Article

    Open Access

    Genotype by environment interaction for gene expression in Drosophila melanogaster

    The genetics of phenotypic responses to changing environments remains elusive. Using whole-genome quantitative gene expression as a model, here we study how the genetic architecture of regulatory variation in ...

    Wen Huang, Mary Anna Carbone, Richard F. Lyman in Nature Communications (2020)

  6. Article

    Open Access

    Testing the assumptions of parametric linear models: the need for biological data mining in disciplines such as human genetics

    Jason H. Moore, Trudy F. C. Mackay, Scott M. Williams in BioData Mining (2019)

  7. Article

    Open Access

    Genome-Wide Association Study of Circadian Behavior in Drosophila melanogaster

    Circadian rhythms influence physiological processes from sleep–wake cycles to body temperature and are controlled by highly conserved cycling molecules. Although the mechanistic basis of the circadian clock ha...

    Susan T. Harbison, Shailesh Kumar, Wen Huang, Lenovia J. McCoy in Behavior Genetics (2019)

  8. Article

    Open Access

    Effect of genetic architecture on the prediction accuracy of quantitative traits in samples of unrelated individuals

    Predicting complex phenotypes from genomic data is a fundamental aim of animal and plant breeding, where we wish to predict genetic merits of selection candidates; and of human genetics, where we wish to predi...

    Fabio Morgante, Wen Huang, Christian Maltecca, Trudy F. C. Mackay in Heredity (2018)

  9. No Access

    Article

    The road less traveled: from genotype to phenotype in flies and humans

    Understanding how genomic variation gives rise to phenotypic variation is essential for elucidating mechanisms of adaptive evolution, plant and animal breeding, and precision medicine. However, identifying cau...

    Robert R. H. Anholt, Trudy F. C. Mackay in Mammalian Genome (2018)

  10. Article

    Open Access

    Regulation of Drosophila Lifespan by bellwether Promoter Alleles

    Longevity varies among individuals, but how natural genetic variation contributes to variation in lifespan is poorly understood. Drosophila melanogaster presents an advantageous model system to explore the geneti...

    Júlia Frankenberg Garcia, Mary Anna Carbone, Trudy F. C. Mackay in Scientific Reports (2017)

  11. No Access

    Article

    Genetic and Genomic Response to Selection for Food Consumption in Drosophila melanogaster

    Food consumption is an essential component of animal fitness; however, excessive food intake in humans increases risk for many diseases. The roles of neuroendocrine feedback loops, food sensing modalities, and...

    Megan E. Garlapow, Logan J. Everett, Shanshan Zhou in Behavior Genetics (2017)

  12. No Access

    Article

    Evaluation of artificial selection in Standard Poodles using whole-genome sequencing

    Identifying regions of artificial selection within dog breeds may provide insights into genetic variation that underlies breed-specific traits or diseases—particularly if these traits or disease predisposition...

    Steven G. Friedenberg, Kathryn M. Meurs, Trudy F. C. Mackay in Mammalian Genome (2016)

  13. Article

    Open Access

    The genetic basis of natural variation in mushroom body size in Drosophila melanogaster

    Genetic variation in brain size may provide the basis for the evolution of the brain and complex behaviours. The genetic substrate and the selective pressures acting on brain size are poorly understood. Here w...

    Liesbeth Zwarts, Lies Vanden Broeck, Elisa Cappuyns in Nature Communications (2015)

  14. Article

    Open Access

    Polymorphisms in early neurodevelopmental genes affect natural variation in alcohol sensitivity in adult drosophila

    Alcohol abuse and alcoholism are significant public health problems, but the genetic basis for individual variation in alcohol sensitivity remains poorly understood. Drosophila melanogaster presents a powerful mo...

    Tatiana V. Morozova, Wen Huang, Victoria A. Pray, Thomas Whitham in BMC Genomics (2015)

  15. Article

    Open Access

    Genetic map** uncovers cis-regulatory landscape of RNA editing

    Adenosine-to-inosine (A-to-I) RNA editing, catalysed by ADAR enzymes conserved in metazoans, plays an important role in neurological functions. Although the fine-tuning mechanism provided by A-to-I RNA editing...

    Gokul Ramaswami, Patricia Deng, Rui Zhang, Mary Anna Carbone in Nature Communications (2015)

  16. Article

    Open Access

    Erratum to: Why epistasis is important for tackling complex human disease genetics

    Trudy F. C. Mackay, Jason H. Moore in Genome Medicine (2015)

  17. Article

    Open Access

    Genetic Architecture of Micro-Environmental Plasticity in Drosophila melanogaster

    Individuals of the same genotype do not have the same phenotype for quantitative traits when reared under common macro-environmental conditions, a phenomenon called micro-environmental plasticity. Genetic vari...

    Fabio Morgante, Peter Sørensen, Daniel A. Sorensen in Scientific Reports (2015)

  18. No Access

    Protocol

    Epistasis for Quantitative Traits in Drosophila

    The role of gene–gene interactions in the genetic architecture of quantitative traits is controversial, despite the biological plausibility of nonlinear molecular interactions underpinning variation in quantit...

    Trudy F. C. Mackay in Epistasis (2015)

  19. Article

    Does evolutionary theory need a rethink?

    Researchers are divided over what processes should be considered fundamental.

    Kevin Laland, Tobias Uller, Marc Feldman, Kim Sterelny, Gerd B. Müller in Nature (2014)

  20. Article

    Open Access

    Genetics and genomics of alcohol sensitivity

    Alcohol abuse and alcoholism incur a heavy socioeconomic cost in many countries. Both genetic and environmental factors contribute to variation in the inebriating effects of alcohol and alcohol addiction among...

    Tatiana V. Morozova, Trudy F. C. Mackay in Molecular Genetics and Genomics (2014)

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