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  1. Article

    Open Access

    Genomic dissection and mutation-specific target discovery for breast cancer PIK3CA hotspot mutations

    Recent advancements in high-throughput genomics and targeted therapies have provided tremendous potential to identify and therapeutically target distinct mutations associated with cancers. However, to date the...

    Adam X. Miranda, Justin Kemp, Brad A. Davidson, Sara Erika Bellomo in BMC Genomics (2024)

  2. Article

    Open Access

    Author Correction: scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells

    **xin Phaedo Chen, Constantin Diekmann, Honggui Wu, Chong Chen in Nature Communications (2024)

  3. Article

    Open Access

    scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells

    Extrachromosomal circular DNAs (eccDNAs) have emerged as important intra-cellular mobile genetic elements that affect gene copy number and exert in trans regulatory roles within the cell nucleus. Here, we desc...

    **xin Phaedo Chen, Constantin Diekmann, Honggui Wu, Chong Chen in Nature Communications (2024)

  4. Article

    Open Access

    Fatty acid synthase as a new therapeutic target for HER2-positive gastric cancer

    Trastuzumab is an HER2-specific agent approved as the gold-standard therapy for advanced HER2-positive (HER2+) gastric cancer (GC), but the high rate and rapid appearance of resistance limit its clinical effic...

    Lorenzo Castagnoli, Simona Corso, Alma Franceschini in Cellular Oncology (2023)

  5. Article

    Open Access

    Integrative genomic and transcriptomic analyses illuminate the ontology of HER2-low breast carcinomas

    The “HER2-low” nomenclature identifies breast carcinomas (BCs) displaying a HER2 score of 1+/2+ in immunohistochemistry and lacking ERBB2 amplification. Whether HER2-low BCs (HLBCs) constitute a distinct entity i...

    Enrico Berrino, Laura Annaratone, Sara Erika Bellomo, Giulio Ferrero in Genome Medicine (2022)

  6. Article

    Open Access

    Clustered protocadherins methylation alterations in cancer

    Clustered protocadherins (PCDHs) map in tandem at human chromosome 5q31 and comprise three multi-genes clusters: α-, β- and γ-PCDH. The expression of this cluster consists of a complex mechanism involving DNA hub...

    Ana Florencia Vega-Benedetti, Eleonora Loi, Loredana Moi in Clinical Epigenetics (2019)

  7. Article

    Correction: Corrigendum: Stromal contribution to the colorectal cancer transcriptome

    Nat. Genet. 47, 312–319 (2015); published online 23 February 2015; corrected after print 29 August 2016 In the version of this article initially published, an affiliation for author Zsolt Fekete was incorrectl...

    Claudio Isella, Andrea Terrasi, Sara Erika Bellomo, Consalvo Petti in Nature Genetics (2016)

  8. No Access

    Article

    Stromal contribution to the colorectal cancer transcriptome

    Claudio Isella and colleagues report an analysis of colorectal cancer (CRC) gene expression data from patient-derived xenografts, which they use to reconcile three commonly used CRC classification systems. The...

    Claudio Isella, Andrea Terrasi, Sara Erika Bellomo, Consalvo Petti in Nature Genetics (2015)