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  1. Article

    Open Access

    Essential role of the histone lysine demethylase KDM4A in the biology of malignant pleural mesothelioma (MPM)

    Malignant pleural mesothelioma (MPM) is a highly aggressive cancer with a dismal prognosis. There is increasing interest in targeting chromatin regulatory pathways in difficult-to-treat cancers. In preliminary...

    Moshe Lapidot, Abigail E. Case, Ellen L. Weisberg in British Journal of Cancer (2021)

  2. Article

    Open Access

    Author Correction: A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

    An amendment to this paper has been published and can be accessed via a link at the top of the paper.

    Michal Slyper, Caroline B. M. Porter, Orr Ashenberg, Julia Waldman in Nature Medicine (2020)

  3. Article

    Open Access

    A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

    Single-cell genomics is essential to chart tumor ecosystems. Although single-cell RNA-Seq (scRNA-Seq) profiles RNA from cells dissociated from fresh tumors, single-nucleus RNA-Seq (snRNA-Seq) is needed to prof...

    Michal Slyper, Caroline B. M. Porter, Orr Ashenberg, Julia Waldman in Nature Medicine (2020)

  4. Article

    Open Access

    Neoadjuvant irinotecan, cisplatin, and concurrent radiation therapy with celecoxib for patients with locally advanced esophageal cancer

    Patients with locally advanced esophageal cancer who are treated with trimodality therapy have a high recurrence rate. Preclinical evidence suggests that inhibition of cyclooxygenase 2 (COX2) increases the eff...

    James M. Cleary, Harvey J. Mamon, Jackie Szymonifka, Raphael Bueno, Noah Choi in BMC Cancer (2016)

  5. No Access

    Article

    Comprehensive genomic analysis of malignant pleural mesothelioma identifies recurrent mutations, gene fusions and splicing alterations

    Raphael Bueno, Eric Stawiski, Somasekar Seshagiri and colleagues present a comprehensive genomic analysis of malignant pleural mesothelioma. They identify four distinct molecular subtypes using RNA-seq data an...

    Raphael Bueno, Eric W Stawiski, Leonard D Goldstein, Steffen Durinck in Nature Genetics (2016)

  6. Article

    Open Access

    Genes Associated With Prognosis After Surgery For Malignant Pleural Mesothelioma Promote Tumor Cell Survival In Vitro

    Mesothelioma is an aggressive neoplasm with few effective treatments, one being cytoreductive surgery. We previously described a test, based on differential expression levels of four genes, to predict clinical...

    Gavin J Gordon, Raphael Bueno, David J Sugarbaker in BMC Cancer (2011)

  7. Article

    Open Access

    Peripheral blood gene expression profiles in COPD subjects

    To identify non-invasive gene expression markers for chronic obstructive pulmonary disease (COPD), we performed genome-wide expression profiling of peripheral blood samples from 12 subjects with significant ai...

    Soumyaroop Bhattacharya, Shivraj Tyagi in Journal of Clinical Bioinformatics (2011)