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  1. No Access

    Article

    Single-nucleus and spatial transcriptome profiling of pancreatic cancer identifies multicellular dynamics associated with neoadjuvant treatment

    Pancreatic ductal adenocarcinoma (PDAC) is a highly lethal and treatment-refractory cancer. Molecular stratification in pancreatic cancer remains rudimentary and does not yet inform clinical management or ther...

    William L. Hwang, Karthik A. Jagadeesh, Jimmy A. Guo, Hannah I. Hoffman in Nature Genetics (2022)

  2. Article

    Open Access

    Mouse fetal growth restriction through parental and fetal immune gene variation and intercellular communications cascade

    Fetal growth restriction (FGR) affects 5–10% of pregnancies, and can have serious consequences for both mother and child. Prevention and treatment are limited because FGR pathogenesis is poorly understood. Gen...

    Gurman Kaur, Caroline B. M. Porter, Orr Ashenberg, Jack Lee in Nature Communications (2022)

  3. Article

    COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets

    COVID-19, which is caused by SARS-CoV-2, can result in acute respiratory distress syndrome and multiple organ failure14, but little is known about its pathophysiology. Here we generated single-cell atlases of 24...

    Toni M. Delorey, Carly G. K. Ziegler, Graham Heimberg, Rachelly Normand in Nature (2021)

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    Article

    Skin-resident innate lymphoid cells converge on a pathogenic effector state

    Tissue-resident innate lymphoid cells (ILCs) help sustain barrier function and respond to local signals. ILCs are traditionally classified as ILC1, ILC2 or ILC3 on the basis of their expression of specific tra...

    Piotr Bielecki, Samantha J. Riesenfeld, Jan-Christian Hütter in Nature (2021)

  5. Article

    Open Access

    Author Correction: A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

    An amendment to this paper has been published and can be accessed via a link at the top of the paper.

    Michal Slyper, Caroline B. M. Porter, Orr Ashenberg, Julia Waldman in Nature Medicine (2020)

  6. No Access

    Article

    A single-cell landscape of high-grade serous ovarian cancer

    Malignant abdominal fluid (ascites) frequently develops in women with advanced high-grade serous ovarian cancer (HGSOC) and is associated with drug resistance and a poor prognosis1. To comprehensively characteriz...

    Benjamin Izar, Itay Tirosh, Elizabeth H. Stover, Isaac Wakiro in Nature Medicine (2020)

  7. Article

    Open Access

    A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

    Single-cell genomics is essential to chart tumor ecosystems. Although single-cell RNA-Seq (scRNA-Seq) profiles RNA from cells dissociated from fresh tumors, single-nucleus RNA-Seq (snRNA-Seq) is needed to prof...

    Michal Slyper, Caroline B. M. Porter, Orr Ashenberg, Julia Waldman in Nature Medicine (2020)

  8. Article

    Author Correction: Design, execution, and analysis of CRISPR–Cas9-based deletions and genetic interaction networks in the fungal pathogen Candida albicans

    The version of this paper originally published contained reference errors. The sentence “To dissect complex genetic interactions in C. albicans, a CRISPR–Cas9-based Gene Drive Array (GDA) was developed” incorrect...

    Viola Halder, Caroline B. M. Porter, Alejandro Chavez in Nature Protocols (2019)

  9. No Access

    Article

    Design, execution, and analysis of CRISPR–Cas9-based deletions and genetic interaction networks in the fungal pathogen Candida albicans

    The study of fungal pathogens is of immediate importance, yet progress is hindered by the technical challenges of genetic manipulation. For Candida species, their inability to maintain plasmids, unusual codon usa...

    Viola Halder, Caroline B. M. Porter, Alejandro Chavez in Nature Protocols (2019)

  10. No Access

    Article

    A CRISPR–Cas9-based gene drive platform for genetic interaction analysis in Candida albicans

    Candida albicans is the leading cause of fungal infections; yet, complex genetic interaction analysis remains cumbersome in this diploid pathogen. Here, we developed a CRISPR–Cas9-based ‘gene dri...

    Rebecca S. Shapiro, Alejandro Chavez, Caroline B. M. Porter in Nature Microbiology (2018)