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  1. Article

    Open Access

    Getting your DUCs in a row - standardising the representation of Digital Use Conditions

    Improving patient care and advancing scientific discovery requires responsible sharing of research data, healthcare records, biosamples, and biomedical resources that must also respect applicable use condition...

    Francis Jeanson, Spencer J. Gibson, Pinar Alper, Alexander Bernier in Scientific Data (2024)

  2. Article

    Open Access

    Privacy risks of whole-slide image sharing in digital pathology

    Access to large volumes of so-called whole-slide images—high-resolution scans of complete pathological slides—has become a cornerstone of the development of novel artificial intelligence methods in pathology f...

    Petr Holub, Heimo Müller, Tomáš Bíl, Luca Pireddu, Markus Plass in Nature Communications (2023)

  3. Article

    Open Access

    Lightweight Distributed Provenance Model for Complex Real–world Environments

    Provenance is information describing the lineage of an object, such as a dataset or biological material. Since these objects can be passed between organizations, each organization can document only parts of th...

    Rudolf Wittner, Cecilia Mascia, Matej Gallo, Francesca Frexia in Scientific Data (2022)

  4. Article

    Open Access

    Publisher Correction: Field experiments underestimate aboveground biomass response to drought

    György Kröel-Dulay, Andrea Mojzes, Katalin Szitár in Nature Ecology & Evolution (2022)

  5. Article

    Open Access

    Field experiments underestimate aboveground biomass response to drought

    Researchers use both experiments and observations to study the impacts of climate change on ecosystems, but results from these contrasting approaches have not been systematically compared for droughts. Using a...

    György Kröel-Dulay, Andrea Mojzes, Katalin Szitár in Nature Ecology & Evolution (2022)

  6. No Access

    Chapter and Conference Paper

    ISO 23494: Biotechnology – Provenance Information Model for Biological Specimen And Data

    Exchange of research data and samples in biomedical research has become a common phenomenon, demanding for their effective quality assessment. At the same time, several reports address reproducibility of resea...

    Rudolf Wittner, Petr Holub, Heimo Müller in Provenance and Annotation of Data and Proc… (2021)

  7. Chapter and Conference Paper

    Correction to: ISO 23494: Biotechnology – Provenance Information Model for Biological Specimen And Data

    In the originally published version, the DOI in Reference 7 “Wittner, R., et al.: EOSClife common provenance model. EOSC-Life deliverable D6.2 (2021)” on p.225 was missing. The DOI “10.5281/zenodo.4705074” has...

    Rudolf Wittner, Petr Holub, Heimo Müller in Provenance and Annotation of Data and Proc… (2021)

  8. No Access

    Chapter and Conference Paper

    Non-repudiable Provenance for Clinical Decision Support Systems

    Provenance templates are now a recognised methodology for the construction of data provenance records. Each template defines the provenance of a domain-specific action in abstract form, which may then be insta...

    Elliot Fairweather, Rudolf Wittner in Provenance and Annotation of Data and Proc… (2021)

  9. Article

    Author Correction: Leveraging European infrastructures to access 1 million human genomes by 2022

    An amendment to this paper has been published and can be accessed via a link at the top of the paper.

    Gary Saunders, Michael Baudis, Regina Becker, Sergi Beltran in Nature Reviews Genetics (2019)

  10. No Access

    Article

    Leveraging European infrastructures to access 1 million human genomes by 2022

    Human genomics is undergoing a step change from being a predominantly research-driven activity to one driven through health care as many countries in Europe now have nascent precision medicine programmes. To m...

    Gary Saunders, Michael Baudis, Regina Becker, Sergi Beltran in Nature Reviews Genetics (2019)

  11. No Access

    Article

    Dynamic reconfiguration in multigroup multicast routing under uncertainty

    Motivated by high quality multimedia and remote collaborative environments, we solve the problem of multigroup multicast routing with a number of features important for real-world deployment of the interactive...

    Pavel Troubil, Hana Rudová, Petr Holub in Journal of Heuristics (2018)

  12. No Access

    Article

    BBMRI-ERIC: the novel gateway to biobanks

    BBMRI-ERIC, the Biobanking and BioMolecular Resources Research Infrastructure-European Research Infrastructure Consortium, is a new form of umbrella organization for biobanking in Europe. For rare and common d...

    Michaela Th. Mayrhofer PhD, Petr Holub in Bundesgesundheitsblatt - Gesundheitsforsch… (2016)

  13. No Access

    Article

    Laser Remelting of Plasma-Sprayed Tungsten Coatings

    Laser surface melting was applied on plasma-sprayed tungsten coatings, with the aim to eliminate intersplat voids and improve thermal conductivity. A variety of laser parameters was tested and the morphology a...

    Jiří Matějíček, Petr Holub in Journal of Thermal Spray Technology (2014)

  14. No Access

    Chapter and Conference Paper

    Towards User-Aware Multi-touch Interaction Layer for Group Collaborative Systems

    State-of-the-art collaborative workspaces are represented either by large tabletops or wall-sized interactive displays. Extending bare multi-touch capability with metadata for association of touch events to in...

    Vít Rusňák, Lukáš Ručka, Petr Holub in Mathematical and Engineering Methods in Co… (2013)

  15. No Access

    Article

    Different nutrient use strategies of expansive grasses Calamagrostis epigejos and Arrhenatherum elatius

    Enhanced nitrogen (N) levels accelerate expansion of Calamagrostis epigejos and Arrhenatherum elatius, highly aggressive expanders displacing original dry acidophilous grassland vegetation in the Podyjí National ...

    Petr Holub, Ivan Tůma, Jaroslav Záhora, Karel Fiala in Biologia (2012)

  16. No Access

    Article

    The role of Athyrium distentifolium in reduction of soil acidification and base cation losses due to acid deposition in a deforested mountain area

    The tall fern (Athyrium distentifolium Tausch ex Opiz) forms large stands in many deforested sites in Central European mountains. In the present study, we want to demonstrate that the effect of ferns on the leach...

    Ivan Tůma, Karel Fiala, Jaroslav Záhora, Petr Holub in Plant and Soil (2012)

  17. No Access

    Chapter and Conference Paper

    Low GPU Occupancy Approach to Fast Arithmetic Coding in JPEG2000

    Arithmetic coding, and especially adaptive MQ-Coding of JPEG2000, is a serial process, which does not match specifics of GPUs as massively parallel processors well. In this paper we study and evaluate several ...

    Jiří Matela, Martin Šrom, Petr Holub in Mathematical and Engineering Methods in Co… (2012)

  18. No Access

    Chapter and Conference Paper

    Exploring Collaboration in Group-to-Group Videoconferencing

    Prior work on videoconferencing shows that various design changes can have profound impacts on group dynamics. In order to further explore the available design space, we report on a qualitative study that comp...

    Petr Slovák, Peter Novák, Pavel Troubil in From Research to Practice in the Design of… (2012)

  19. No Access

    Article

    Data transfer planning with tree placement for collaborative environments

    Latency-sensitive data distribution and media streaming is a part of many network-centric applications. Based on our previous practical experiences with interactive high-quality media distribution and orchestr...

    Petr Holub, Hana Rudová, Miloš Liška in Constraints (2011)

  20. No Access

    Article

    Effect of nitrogen addition and drought on above-ground biomass of expanding tall grasses Calamagrostis epigejos and Arrhenatherum elatius

    Tall expansive grasses act as serious weeds since they spread intensively and are a important threat to biodiversity of various plant communities. A field experiment was set up based on three sets of paired pl...

    Karel Fiala, Ivan Tůma, Petr Holub in Biologia (2011)

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