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Article
Open AccessPrivacy risks of whole-slide image sharing in digital pathology
Access to large volumes of so-called whole-slide images—high-resolution scans of complete pathological slides—has become a cornerstone of the development of novel artificial intelligence methods in pathology f...
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Chapter and Conference Paper
AI Support for Accelerating Histopathological Slide Examinations of Prostate Cancer in Clinical Studies
While studies in pathology are essential for the progress in the diagnostic and prognostic techniques in the field, pathologist time is becoming an increasingly scarce resource, and can indeed become the limit...
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Chapter
The DeepHealth Toolkit: A Key European Free and Open-Source Software for Deep Learning and Computer Vision Ready to Exploit Heterogeneous HPC and Cloud Architectures
At the present time, we are immersed in the convergence between Big Data, High-Performance Computing and Artificial Intelligence. Technological progress in these three areas has accelerated in recent years, fo...
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Chapter and Conference Paper
ISO 23494: Biotechnology – Provenance Information Model for Biological Specimen And Data
Exchange of research data and samples in biomedical research has become a common phenomenon, demanding for their effective quality assessment. At the same time, several reports address reproducibility of resea...
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Chapter and Conference Paper
Correction to: ISO 23494: Biotechnology – Provenance Information Model for Biological Specimen And Data
In the originally published version, the DOI in Reference 7 “Wittner, R., et al.: EOSClife common provenance model. EOSC-Life deliverable D6.2 (2021)” on p.225 was missing. The DOI “10.5281/zenodo.4705074” has...
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Chapter and Conference Paper
TDM Edge Gateway: A Flexible Microservice-Based Edge Gateway Architecture for Heterogeneous Sensors
How to effectively handle heterogeneous data sources is one of the main challenges in the design of large-scale research computing platforms to collect, analyze and integrate data from IoT sensors. The platfo...
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Chapter and Conference Paper
Container Orchestration on HPC Clusters
Use of software containers and services in science is a rising trend that is not satisfied by the HPC computing resources often available in research contexts. We propose a method to grow Kubernetes clusters ...
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Article
Open AccessRecommendations on e-infrastructures for next-generation sequencing
With ever-increasing amounts of data being produced by next-generation sequencing (NGS) experiments, the requirements placed on supporting e-infrastructures have grown. In this work, we provide recommendations...
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Article
Open AccessExperiences with workflows for automating data-intensive bioinformatics
High-throughput technologies, such as next-generation sequencing, have turned molecular biology into a data-intensive discipline, requiring bioinformaticians to use high-performance computing resources and car...
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Article
Open AccessFingerprint-based detection of acute aquatic toxicity
