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Recent ultra-rare inherited variants implicate new autism candidate risk genes

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  1. Article

    Open Access

    Genomic analysis of 116 autism families strengthens known risk genes and highlights promising candidates

    Autism spectrum disorder (ASD) is a complex neurodevelopmental condition with a strong genetic component in which rare variants contribute significantly to risk. We performed whole genome and/or exome sequenci...

    Marta Viggiano, Fabiola Ceroni, Paola Visconti, Annio Posar in npj Genomic Medicine (2024)

  2. Article

    Open Access

    Pangenome-based genome inference allows efficient and accurate genoty** across a wide spectrum of variant classes

    Typical genoty** workflows map reads to a reference genome before identifying genetic variants. Generating such alignments introduces reference biases and comes with substantial computational burden. Further...

    Jana Ebler, Peter Ebert, Wayne E. Clarke, Tobias Rausch, Peter A. Audano in Nature Genetics (2022)

  3. Article

    Open Access

    Coding and noncoding variants in EBF3 are involved in HADDS and simplex autism

    Previous research in autism and other neurodevelopmental disorders (NDDs) has indicated an important contribution of protein-coding (coding) de novo variants (DNVs) within specific genes. The role of de novo n...

    Evin M. Padhi, Tristan J. Hayeck, Zhang Cheng, Sumantra Chatterjee in Human Genomics (2021)

  4. Article

    Open Access

    Correction to: Sequencing and curation strategies for identifying candidate glioblastoma treatments

    Following publication of the original article [1], it was reported that the given name of the fourteenth author was incorrectly published. The incorrect and the correct names are given below.

    Mayu O. Frank, Takahiko Koyama, Kahn Rhrissorrakrai, Nicolas Robine in BMC Medical Genomics (2019)

  5. Article

    Open Access

    Sequencing and curation strategies for identifying candidate glioblastoma treatments

    Prompted by the revolution in high-throughput sequencing and its potential impact for treating cancer patients, we initiated a clinical research study to compare the ability of different sequencing assays and ...

    Mayu O. Frank, Takahiko Koyama, Kahn Rhrissorrakrai, Nicolas Robine in BMC Medical Genomics (2019)

  6. Article

    Open Access

    Novel origins of copy number variation in the dog genome

    Copy number variants (CNVs) account for substantial variation between genomes and are a major source of normal and pathogenic phenotypic differences. The dog is an ideal model to investigate mutational mechani...

    Jonas Berglund, Elisa M Nevalainen, Anna-Maja Molin, Michele Perloski in Genome Biology (2012)

  7. Article

    Erratum to: Closing gaps in the human genome using sequencing by synthesis

    Manuel Garber, Michael C Zody, Harindra C Arachchi, Aaron Berlin in Genome Biology (2011)

  8. Article

    Open Access

    Closing gaps in the human genome using sequencing by synthesis

    The most recent release of the finished human genome contains 260 euchromatic gaps (excluding chromosome Y). Recent work has helped explain a large number of these unresolved regions as 'structural' in nature....

    Manuel Garber, Michael C Zody, Harindra M Arachchi, Aaron Berlin in Genome Biology (2009)