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  1. Article

    Open Access

    Correction: A common methodological phylogenomics framework for intra-patient heteroplasmies to infer SARS-CoV-2 sublineages and tumor clones

    Filippo Utro, Chaya Levovitz, Kahn Rhrissorrakrai, Laxmi Parida in BMC Genomics (2023)

  2. No Access

    Article

    Evolutionary history of transformation from chronic lymphocytic leukemia to Richter syndrome

    Richter syndrome (RS) arising from chronic lymphocytic leukemia (CLL) exemplifies an aggressive malignancy that develops from an indolent neoplasm. To decipher the genetics underlying this transformation, we c...

    Erin M. Parry, Ignaty Leshchiner, Romain Guièze, Connor Johnson in Nature Medicine (2023)

  3. No Access

    Article

    Distinct cellular dynamics associated with response to CAR-T therapy for refractory B cell lymphoma

    Chimeric antigen receptor (CAR)-T cell therapy has revolutionized the treatment of hematologic malignancies. Approximately half of patients with refractory large B cell lymphomas achieve durable responses from...

    Nicholas J. Haradhvala, Mark B. Leick, Katie Maurer, Satyen H. Gohil in Nature Medicine (2022)

  4. Article

    Open Access

    Author Correction: Integrative molecular and clinical profiling of acral melanoma links focal amplification of 22q11.21 to metastasis

    Farshad Farshidfar, Kahn Rhrissorrakrai, Chaya Levovitz, Cong Peng in Nature Communications (2022)

  5. Article

    Open Access

    Integrative molecular and clinical profiling of acral melanoma links focal amplification of 22q11.21 to metastasis

    Acral melanoma, the most common melanoma subtype among non-White individuals, is associated with poor prognosis. However, its key molecular drivers remain obscure. Here, we perform integrative genomic and clin...

    Farshad Farshidfar, Kahn Rhrissorrakrai, Chaya Levovitz, Cong Peng in Nature Communications (2022)

  6. Article

    Open Access

    A common methodological phylogenomics framework for intra-patient heteroplasmies to infer SARS-CoV-2 sublineages and tumor clones

    All diseases containing genetic material undergo genetic evolution and give rise to heterogeneity including cancer and infection. Although these illnesses are biologically very different, the ability for phylo...

    Filippo Utro, Chaya Levovitz, Kahn Rhrissorrakrai, Laxmi Parida in BMC Genomics (2021)

  7. Article

    Author Correction: Liquid versus tissue biopsy for detecting acquired resistance and tumor heterogeneity in gastrointestinal cancers

    An amendment to this paper has been published and can be accessed via a link at the top of the paper.

    Aparna R. Parikh, Ignaty Leshchiner, Liudmila Elagina, Lipika Goyal in Nature Medicine (2019)

  8. No Access

    Article

    Liquid versus tissue biopsy for detecting acquired resistance and tumor heterogeneity in gastrointestinal cancers

    During cancer therapy, tumor heterogeneity can drive the evolution of multiple tumor subclones harboring unique resistance mechanisms in an individual patient13. Previous case reports and small case series have ...

    Aparna R. Parikh, Ignaty Leshchiner, Liudmila Elagina, Lipika Goyal in Nature Medicine (2019)

  9. Article

    Open Access

    Correction to: Sequencing and curation strategies for identifying candidate glioblastoma treatments

    Following publication of the original article [1], it was reported that the given name of the fourteenth author was incorrectly published. The incorrect and the correct names are given below.

    Mayu O. Frank, Takahiko Koyama, Kahn Rhrissorrakrai, Nicolas Robine in BMC Medical Genomics (2019)

  10. Article

    Open Access

    Sequencing and curation strategies for identifying candidate glioblastoma treatments

    Prompted by the revolution in high-throughput sequencing and its potential impact for treating cancer patients, we initiated a clinical research study to compare the ability of different sequencing assays and ...

    Mayu O. Frank, Takahiko Koyama, Kahn Rhrissorrakrai, Nicolas Robine in BMC Medical Genomics (2019)

  11. Article

    Open Access

    Analysis on GENIE reveals novel recurrent variants that affect molecular diagnosis of sizable number of cancer patients

    Significant numbers of variants detected in cancer patients are often left labeled only as variants of unknown significance (VUS). In order to expand precision medicine to a wider population, we need to extend...

    Takahiko Koyama, Kahn Rhrissorrakrai, Laxmi Parida in BMC Cancer (2019)

  12. Article

    Open Access

    Erratum to: MINE: Module Identification in Networks

    Kahn Rhrissorrakrai, Kristin C. Gunsalus in BMC Bioinformatics (2016)

  13. Article

    Open Access

    The species translation challenge—A systems biology perspective on human and rat bronchial epithelial cells

    The biological responses to external cues such as drugs, chemicals, viruses and hormones, is an essential question in biomedicine and in the field of toxicology, and cannot be easily studied in humans. Thus, b...

    Carine Poussin, Carole Mathis, Leonidas G Alexopoulos in Scientific Data (2014)

  14. Article

    Open Access

    MINE: Module Identification in Networks

    Graphical models of network associations are useful for both visualizing and integrating multiple types of association data. Identifying modules, or groups of functionally related gene products, is an importan...

    Kahn Rhrissorrakrai, Kristin C Gunsalus in BMC Bioinformatics (2011)