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  1. Article

    Open Access

    Dynamical states, possibilities and propagation of stress signal

    The stress driven dynamics of Notch-Wnt-p53 cross-talk is subjected to a few possible dynamical states governed by simple fractal rules, and allowed to decide its own fate by choosing one of these states which...

    Md. Zubbair Malik, Shahnawaz Ali, Soibam Shyamchand Singh in Scientific Reports (2017)

  2. No Access

    Article

    Potential entry inhibitors of the envelope protein (E2) of Chikungunya virus: in silico structural modeling, docking and molecular dynamic studies

    Chikungunya fever is an arboviral infection caused by the Chikungunya virus (CHIKV) and is transmitted by Aedes mosquito. The envelope protein (E2) of Chikungunya virus is involved in attachment of virion with th...

    Farah Deeba, Md. Zubbair Malik, Irshad Husain Naqvi in VirusDisease (2017)

  3. No Access

    Chapter

    Pharmacokinetic and Molecular Docking Studies of Plant-Derived Natural Compounds to Exploring Potential Anti-Alzheimer Activity

    Alzheimer disease (AD) is the leading cause of dementia and accounts for 60–80% cases. Two main factors called β-amyloid (Aβ) plaques and tangles are prime suspects in damaging and killing nerve cells. However...

    Aftab Alam, Naaila Tamkeen, Nikhat Imam in In Silico Approach for Sustainable Agricul… (2018)

  4. Article

    Open Access

    Assessment of the key regulatory genes and their Interologs for Turner Syndrome employing network approach

    Turner Syndrome (TS) is a condition where several genes are affected but the molecular mechanism remains unknown. Identifying the genes that regulate the TS network is one of the main challenges in understandi...

    Anam Farooqui, Safia Tazyeen, Mohd. Murshad Ahmed, Aftab Alam in Scientific Reports (2018)

  5. Article

    Open Access

    Identification of key regulators in prostate cancer from gene expression datasets of patients

    Identification of key regulators and regulatory pathways is an important step in the discovery of genes involved in cancer. Here, we propose a method to identify key regulators in prostate cancer (PCa) from a ...

    Irengbam Rocky Mangangcha, Md. Zubbair Malik, Ömer Küçük, Shakir Ali in Scientific Reports (2019)

  6. Article

    Open Access

    Methodology of predicting novel key regulators in ovarian cancer network: a network theoretical approach

    Identification of key regulator/s in ovarian cancer (OC) network is important for potential drug target and prevention from this cancer. This study proposes a method to identify the key regulators of this netw...

    Md. Zubbair Malik, Keilash Chirom, Shahnawaz Ali, Romana Ishrat in BMC Cancer (2019)

  7. Article

    Open Access

    Transition and identification of pathological states in p53 dynamics for therapeutic intervention

    We study a minimal model of the stress-driven p53 regulatory network that includes competition between active and mutant forms of the tumor-suppressor gene p53. Depending on the nature and level of the externa...

    Amit Jangid, Md. Zubbair Malik, Ram Ramaswamy, R. K. Brojen Singh in Scientific Reports (2021)

  8. Article

    Brain Disease Network Analysis to Elucidate the Neurological Manifestations of COVID-19

    Although COVID-19 largely causes respiratory complications, it can also lead to various extrapulmonary manifestations resulting in higher mortality and these comorbidities are posing a challenge to the health ...

    Kartikay Prasad, Suliman Yousef AlOmar, Saeed Awad M. Alqahtani in Molecular Neurobiology (2021)

  9. No Access

    Article

    Noise and delay can shape distribution functions in stochastic reaction dynamics

    Noise can drive the dynamics of stochastic systems to different important states. Delay is another significant parameter that may impart non-Markovian behavior in the system dynamics. The interplay of noise an...

    Jyoti Bhadana, Athokpam Langlen Chanu, Md. Zubbair Malik in Nonlinear Dynamics (2021)

  10. Article

    Open Access

    Identification of key regulators in Sarcoidosis through multidimensional systems biological approach

    Sarcoidosis is a multi-organ disorder where immunology, genetic and environmental factors play a key role in causing Sarcoidosis, but its molecular mechanism remains unclear. Identification of its genetics pro...

    Safia Tazyeen, Mohd Murshad Ahmed, Anam Farooqui, Aftab Alam in Scientific Reports (2022)

  11. Article

    Open Access

    Elevated Vulnerability of Chronic Leukemia Patients to COVID-19 Infection: A Systems Biology Approach

    Emerging evidence has shown that SARS-CoV-2 may affect the circulatory system in addition to the human respiratory system. However, no study has indicated whether patients with leukemia have a greater likeliho...

    Abdulkhaliq J. Alsalman, Mohammed Al Mohaini in Dr. Sulaiman Al Habib Medical Journal (2022)

  12. No Access

    Article

    Network pharmacology and bioinformatics approach reveals the therapeutic mechanism of action of curcumin in Alzheimer disease

    Curcumin is a natural anti-inflammatory and antioxidant substance which plays a major role in reducing the amyloid plaques formation, which is the major cause of Alzheimer’s disease (AD). Consequently, a metho...

    Deepanshi Vijh, Md. Ali Imam, Mohd Maksuf Ul Haque, Subhajit Das in Metabolic Brain Disease (2023)

  13. Article

    SARS CoV-2 spike protein variants exploit DC-SIGN/DC-SIGNR receptor for evolution and severity: an in-silico insight

    The Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) is related with the COVID-19 pandemic. Recent spike protein variations have had an effect on the transmission of the virus. In addition to ACE-2...

    Jyoti Gupta, Md. Zubbair Malik, Maya Chaturvedi, Mohit Mishra in VirusDisease (2023)

  14. No Access

    Article

    Comprehensive multiomics and in silico approach uncovers prognostic, immunological, and therapeutic roles of ANLN in lung adenocarcinoma

    The anillin actin-binding protein (ANLN) is immensely overexpressed in cancers, including lung cancer (LC). Phytocompounds have gained interest due to their broader potential and reduced unwanted effects. Screeni...

    Prithvi Singh, Shweta Arora, Md Amjad Beg in Functional & Integrative Genomics (2023)

  15. Article

    Correction to: Comprehensive multiomics and in silico approach uncovers prognostic, immunological, and therapeutic roles of ANLN in lung adenocarcinoma

    Prithvi Singh, Shweta Arora, Md Amjad Beg in Functional & Integrative Genomics (2023)

  16. No Access

    Article

    Investigating the link between miR-34a-5p and TLR6 signaling in sepsis-induced ARDS

    Acute lung injury (ALI)/acute respiratory distress syndrome (ARDS) are lung complications diagnosed by impaired gaseous exchanges leading to mortality. From the diverse etiologies, sepsis is a prominent contri...

    Mohd Junaid Khan, Prithvi Singh, Prakash Jha, Arnab Nayek, Md. Zubbair Malik in 3 Biotech (2023)

  17. Article

    Open Access

    A bioinformatics approach to elucidate conserved genes and pathways in C. elegans as an animal model for cardiovascular research

    Cardiovascular disease (CVD) is a collective term for disorders of the heart and blood vessels. The molecular events and biochemical pathways associated with CVD are difficult to study in clinical settings on ...

    Ashwini Kumar Ray, Anjali Priya, Md. Zubbair Malik in Scientific Reports (2024)

  18. No Access

    Article

    A Comprehensive Pilot Study to Elucidate the Distinct Gut Microbial Composition and Its Functional Significance in Cardio-Metabolic Disease

    Cardio-metabolic disease is a significant global health challenge with increasing prevalence. Recent research underscores the disruption of gut microbial balance as a key factor in disease susceptibility. We a...

    Ashwini Kumar Ray, Avaneesh Shukla, Alka Yadav, Urvinder Kaur in Biochemical Genetics (2024)