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  1. Article

    Open Access

    WNT signalling control by KDM5C during development affects cognition

    Although KDM5C is one of the most frequently mutated genes in X-linked intellectual disability1, the exact mechanisms that lead to cognitive impairment remain unknown. Here we use human patient-derived induced pl...

    Violetta Karwacki-Neisius, Ahram Jang, Engin Cukuroglu, Albert Tai, Alan Jiao in Nature (2024)

  2. Article

    Open Access

    SRSF3 maintains transcriptome integrity in oocytes by regulation of alternative splicing and transposable elements

    The RNA-binding protein SRSF3 (also known as SRp20) has critical roles in the regulation of pre-mRNA splicing. Zygotic knockout of Srsf3 results in embryo arrest at the blastocyst stage. However, SRSF3 is also pr...

    Dang Vinh Do, Bernhard Strauss, Engin Cukuroglu, Iain Macaulay in Cell Discovery (2018)

  3. Article

    Open Access

    Enriching Traditional Protein-protein Interaction Networks with Alternative Conformations of Proteins

    Traditional Protein-Protein Interaction (PPI) networks, which use a node and edge representation, lack some valuable information about the mechanistic details of biological processes. Map** protein structure...

    Farideh Halakou, Emel Sen Kilic, Engin Cukuroglu, Ozlem Keskin in Scientific Reports (2017)

  4. Article

    Open Access

    Histone modifications and p53 binding poise the p21 promoter for activation in human embryonic stem cells

    The high proliferation rate of embryonic stem cells (ESCs) is thought to arise partly from very low expression of p21. However, how p21 is suppressed in ESCs has been unclear. We found that p53 binds to the p21 p...

    Yoko Itahana, **qiu Zhang, Jonathan Göke, Leah A. Vardy, Rachel Han in Scientific Reports (2016)

  5. No Access

    Article

    Analysis of Hot Region Organization in Hub Proteins

    Protein interaction maps constructed from binary interactions reveal that some proteins are highly connected to others (acting as hub proteins), whereas some others have a few interactions (at the edges of the...

    Engin Cukuroglu, Attila Gursoy, Ozlem Keskin in Annals of Biomedical Engineering (2010)