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  1. Article

    Open Access

    ASAP: Amplification, sequencing & annotation of plastomes

    Availability of DNA sequence information is vital for pursuing structural, functional and comparative genomics studies in plastids. Traditionally, the first step in mining the valuable information within a chl...

    Amit Dhingra, Kevin M Folta in BMC Genomics (2005)

  2. No Access

    Article

    The genome of the domesticated apple (Malus × domestica Borkh.)

    Riccardo Velasco and colleagues report the genome sequence of the 'Golden Delicious' domesticated apple. These data shed new insight into the genomic events that preceded the origin of this crop.

    Riccardo Velasco, Andrey Zharkikh, Jason Affourtit, Amit Dhingra in Nature Genetics (2010)

  3. Article

    Open Access

    Whole genome sequencing of peach (Prunus persica L.) for SNP identification and selection

    The application of next generation sequencing technologies and bioinformatic scripts to identify high frequency SNPs distributed throughout the peach genome is described. Three peach genomes were sequenced usi...

    Riaz Ahmad, Dan E Parfitt, Joseph Fass, Ebenezer Ogundiwin, Amit Dhingra in BMC Genomics (2011)

  4. Article

    Open Access

    Rapid gene-based SNP and haplotype marker development in non-model eukaryotes using 3'UTR sequencing

    Sweet cherry (Prunus avium L.), a non-model crop with narrow genetic diversity, is an important member of sub-family Amygdoloideae within Rosaceae. Compared to other important members like peach and apple, sweet ...

    Tyson Koepke, Scott Schaeffer, Vandhana Krishnan, Derick Jiwan in BMC Genomics (2012)

  5. No Access

    Article

    Antisense expression of peach mildew resistance locus O (PpMlo1) gene confers cross-species resistance to powdery mildew in Fragaria x ananassa

    Powdery mildew (PM) is one of the major plant pathogens. The conventional method of PM control includes frequent use of sulfur-based fungicides adding to production costs and potential harm to the environment....

    Derick Jiwan, Eric H. Roalson, Dorrie Main, Amit Dhingra in Transgenic Research (2013)

  6. Article

    Open Access

    Development of a highly efficient Axiom™ 70 K SNP array for Pyrus and evaluation for high-density map** and germplasm characterization

    Both a source of diversity and the development of genomic tools, such as reference genomes and molecular markers, are equally important to enable faster progress in plant breeding. Pear (Pyrus spp.) lags far behi...

    Sara Montanari, Luca Bianco, Brian J. Allen, Pedro J. Martínez-García in BMC Genomics (2019)

  7. No Access

    Article

    CRISPR-associated nucleases: the Dawn of a new age of efficient crop improvement

    The world stands at a new threshold today. As a planet, we face various challenges, and the key one is how to continue to produce enough food, feed, fiber, and fuel to support the burgeoning population. In the...

    Rishikesh Ghogare, Bruce Williamson-Benavides in Transgenic Research (2020)

  8. Article

    Preface: Genome editing in plants

    Paul Christou, Amit Dhingra, Inez H. Slamet-Loedin in Transgenic Research (2021)

  9. No Access

    Article

    Genome editing in fruit, ornamental, and industrial crops

    The advent of genome editing has opened new avenues for targeted trait enhancement in fruit, ornamental, industrial, and all specialty crops. In particular, CRISPR-based editing systems, derived from bacterial...

    Fabiola Ramirez-Torres, Rishikesh Ghogare, Evan Stowe in Transgenic Research (2021)

  10. No Access

    Article

    Genome editing reagent delivery in plants

    Genome editing holds the potential for rapid crop improvement to meet the challenge of feeding the planet in a changing climate. The delivery of gene editing reagents into the plant cells has been dominated by...

    Rishikesh Ghogare, Yvonne Ludwig, Gela Myan Bueno in Transgenic Research (2021)