8 Result(s)

Article

ASAP: Amplification, sequencing & annotation of plastomes

Availability of DNA sequence information is vital for pursuing structural, functional and comparative genomics studies in plastids. Traditionally, the first step in mining the valuable information within a chl...

Amit Dhingra, Kevin M Folta in BMC Genomics (2005)

Article

Rapid and accurate pyrosequencing of angiosperm plastid genomes

Plastid genome sequence information is vital to several disciplines in plant biology, including phylogenetics and molecular biology. The past five years have witnessed a dramatic increase in the number of comp...

Michael J Moore, Amit Dhingra, Pamela S Soltis, Regina Shaw… in BMC Plant Biology (2006)

Article

Comparative chloroplast genomics and phylogenetics of Fagopyrum esculentum ssp. ancestrale– A wild ancestor of cultivated buckwheat

Chloroplast genome sequences are extremely informative about species-interrelationships owing to its non-meiotic and often uniparental inheritance over generations. The subject of our study, Fagopyrum esculentum,...

Maria D Logacheva, Tahir H Samigullin, Amit Dhingra, Aleksey A Penin in BMC Plant Biology (2008)

Article

Whole genome sequencing of peach (Prunus persica L.) for SNP identification and selection

The application of next generation sequencing technologies and bioinformatic scripts to identify high frequency SNPs distributed throughout the peach genome is described. Three peach genomes were sequenced usi...

Riaz Ahmad, Dan E Parfitt, Joseph Fass, Ebenezer Ogundiwin, Amit Dhingra… in BMC Genomics (2011)

Article

Rapid gene-based SNP and haplotype marker development in non-model eukaryotes using 3'UTR sequencing

Sweet cherry (Prunus avium L.), a non-model crop with narrow genetic diversity, is an important member of sub-family Amygdoloideae within Rosaceae. Compared to other important members like peach and apple, sweet ...

Tyson Koepke, Scott Schaeffer, Vandhana Krishnan, Derick Jiwan… in BMC Genomics (2012)

Article

Development of a highly efficient Axiom™ 70 K SNP array for Pyrus and evaluation for high-density map** and germplasm characterization

Both a source of diversity and the development of genomic tools, such as reference genomes and molecular markers, are equally important to enable faster progress in plant breeding. Pear (Pyrus spp.) lags far behi...

Sara Montanari, Luca Bianco, Brian J. Allen, Pedro J. Martínez-García… in BMC Genomics (2019)

Article

Methods of analysis of chloroplast genomes of C₃, Kranz type C₄ and Single Cell C₄ photosynthetic members of Chenopodiaceae

Chloroplast genome information is critical to understanding forms of photosynthesis in the plant kingdom. During the evolutionary process, plants have developed different photosynthetic strategies that are acc...

Richard M. Sharpe, Bruce Williamson-Benavides, Gerald E. Edwards… in Plant Methods (2020)

Article

Preface: Genome editing in plants

Paul Christou, Amit Dhingra, Inez H. Slamet-Loedin… in Transgenic Research (2021)