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Article
Germline NPM1 mutations lead to altered rRNA 2′-O-methylation and cause dyskeratosis congenita
RNA modifications are emerging as key determinants of gene expression. However, compelling genetic demonstrations of their relevance to human disease are lacking. Here, we link ribosomal RNA 2′-O-methylation (...
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Article
Erratum: Map** Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis
Nat. Protoc. 9, 263–293 (2014); published online 9 January 2014; corrected after print 24 February 2016 In the version of this article initially published, units were incorrectly reported in Step 2 of the Proc...
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Article
Map** Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis
The identification of sites where RNA-binding proteins (RNABPs) interact with target RNAs opens the door to understanding the vast complexity of RNA regulation. UV cross-linking and immunoprecipitation (CLIP) ...
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Article
Argonaute HITS-CLIP decodes microRNA–mRNA interaction maps
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major chal...
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Article
HITS-CLIP yields genome-wide insights into brain alternative RNA processing
Protein–RNA interactions have critical roles in all aspects of gene expression. However, applying biochemical methods to understand such interactions in living tissues has been challenging. Here we develop a g...
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Article
An RNA map predicting Nova-dependent splicing regulation
Nova proteins are neuron-specific alternative splicing factors. We have combined bioinformatics, biochemistry and genetics to derive an RNA map describing the rules by which Nova proteins regulate alternative ...