111 Result(s)

Article

Tagging large CNV blocks in wheat boosts digitalization of germplasm resources by ultra-low-coverage sequencing

The massive structural variations and frequent introgression highly contribute to the genetic diversity of wheat, while the huge and complex genome of polyploid wheat hinders efficient genoty** of abundant v...

Jianxia Niu, Wenxi Wang, Zihao Wang, Zhe Chen, **aoyu Zhang, Zhen Qin… in Genome Biology (2024)

Article

Genome-wide identification and expression analysis of the KNOX family and its diverse roles in response to growth and abiotic tolerance in sweet potato and its two diploid relatives

KNOXs, a type of homeobox genes that encode atypical homeobox proteins, play an essential role in the regulation of growth and development, hormonal response, and abiotic stress in plants. However, the KNOX gene ...

Li-Cong Jia, Zi-Tong Yang, Li-Li Shang, Shao-Zhen He, Huan Zhang, Xu Li… in BMC Genomics (2024)

Article

Map** and characterization of rust resistance genes Lr53 and Yr35 introgressed from Aegilops species

The rust resistance genes Lr53 and Yr35 were introgressed into bread wheat from Aegilops longissima or Aegilops sharonensis or their S-genome containing species and mapped to the telomeric region of chromosome ar...

Binyang Xu, Tao Shen, Hong Chen, Hongna Li… in Theoretical and Applied Genetics (2024)

Article

Genetic and phenotypic analysis of 225 Chinese children with developmental delay and/or intellectual disability using whole-exome sequencing

Developmental delay (DD), or intellectual disability (ID) is a very large group of early onset disorders that affects 1–2% of children worldwide, which have diverse genetic causes that should be identified. Ge...

Heqian Ma, Lina Zhu, **ao Yang, Meng Ao, Shunxiang Zhang, Meizhen Guo… in BMC Genomics (2024)

Article

Innovative computational tools provide new insights into the polyploid wheat genome

Bread wheat (Triticum aestivum) is an important crop and serves as a significant source of protein and calories for humans, worldwide. Nevertheless, its large and allopolyploid genome poses constraints on genetic...

Yongming Chen, Wenxi Wang, Zhengzhao Yang, Huiru Peng, Zhongfu Ni, Qixin Sun… in aBIOTECH (2024)

Article

Magnaporthe oryzae effector AvrPik-D targets a transcription factor WG7 to suppress rice immunity

Rice blast, caused by the fungal pathogen Magnaporthe oryzae, is one of the most devastating diseases for rice crops, significantly affecting crop yield and quality. During the infection process, M. oryzae secret...

Tao Yang, Linlin Song, **xian Hu, Luao Qiao, Qing Yu, Zonghua Wang, **aofeng Chen… in Rice (2024)

Article

Chromosome-level genome provides insight into the evolution and conservation of the threatened goral (Naemorhedus goral)

Gorals Naemorhedus resemble both goats and antelopes, which prompts much debate about the intragenus species delimitation and phylogenetic status of the genus Naemorhedus within the subfamily Caprinae. Their evol...

Nan Sun, **ao-Ying Ma, Guang-Hong Shi, **ao-Hong Yang, Wei Li… in BMC Genomics (2024)

Article

Phenotypic diversity analysis of Polygala tenuifolia Willd germplasm resources in China

Polygala tenuifolia Willd is a perennial herb in the family Polygalaceae and is used as an expectorant and stimulant in traditional Chinese medicine. There is a large demand for P. tenuifolia, while the good cult...

Hongling Tian, Changjuan Wu, Lijun Zhang… in Genetic Resources and Crop Evolution (2024)

Article

Identification of NADPH Oxidase Genes Crucial for Rice Multiple Disease Resistance and Yield Traits

Reactive oxygen species (ROS) act as a group of signaling molecules in rice functioning in regulation of development and stress responses. Respiratory burst oxidase homologues (Rbohs) are key enzymes in genera...

Yong Zhu, Hao Su, **n-**an Liu, Ji-Fen Sun, Ling **ang, Yan-**g Liu, Zhang-Wei Hu… in Rice (2024)

Article

Author Correction: Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture

Jennifer R. S. Meadows, Jefrey M. Kidd, Guo-Dong Wang, Heidi G. Parker… in Genome Biology (2023)

Article

Transcriptome analysis reveals a lncRNA-miRNA-mRNA regulatory network in OsRpp30-mediated disease resistance in rice

Long non-coding RNAs (lncRNAs) play critical roles in various biological processes in plants. Extensive studies utilizing high-throughput RNA sequencing have revealed that many lncRNAs are involved in plant di...

Minghua Li, Wei Li, Meixia Zhao, Zhiqiang Li, Guo-Liang Wang, Wende Liu… in BMC Genomics (2023)

Article

A loss-of-function mutation in human Oxidation Resistance 1 disrupts the spatial–temporal regulation of histone arginine methylation in neurodevelopment

Oxidation Resistance 1 (OXR1) gene is a highly conserved gene of the TLDc domain-containing family. OXR1 is involved in fundamental biological and cellular processes, including DNA damage response, antioxidant pa...

**aolin Lin, Wei Wang, Mingyi Yang, Nadirah Damseh… in Genome Biology (2023)

Article

Harnessing nanobodies to expand the recognition spectrum of plant NLRs for diverse pathogens

The strategy to expand the recognition spectrum of plant nucleotide-binding domain leucine-rich repeat (NLR) proteins by modifying their recognition sequences is generally limited and often unsuccessful. Koure...

Ruyi Wang, Guo-Liang Wang, Yuese Ning in aBIOTECH (2023)

Article

Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture

The international Dog10K project aims to sequence and analyze several thousand canine genomes. Incorporating 20 × data from 1987 individuals, including 1611 dogs (321 breeds), 309 village dogs, 63 wolves, and ...

Jennifer R. S. Meadows, Jeffrey M. Kidd, Guo-Dong Wang, Heidi G. Parker… in Genome Biology (2023)

Article

Genome-wide association study of quality traits and starch pasting properties of maize kernels

Starch are the main nutritional components of maize (Zea mays L.), and starch pasting properties are widely used as essential indicators for quality estimation. Based on the previous studies, various genes relate...

**nmei Guo, Zhaopeng Ge, Ming Wang, Meiai Zhao, Yuhe Pei, **yun Song in BMC Genomics (2023)

Article

Target residence of Cas9-sgRNA influences DNA double-strand break repair pathway choices in CRISPR/Cas9 genome editing

Due to post-cleavage residence of the Cas9-sgRNA complex at its target, Cas9-induced DNA double-strand breaks (DSBs) have to be exposed to engage DSB repair pathways. Target interaction of Cas9-sgRNA determine...

Si-Cheng Liu, Yi-Li Feng, **u-Na Sun, Ruo-Dan Chen, Qian Liu… in Genome Biology (2022)

Article

miR167d-ARFs Module Regulates Flower Opening and Stigma Size in Rice

Flower opening and stigma exertion are two critical traits for cross-pollination during seed production of hybrid rice (Oryza sativa L.). In this study, we demonstrate that the miR167d-ARFs module regulates stigm...

Zhi-Xue Zhao, **ao-**ao Yin, Sha Li, Yu-Ting Peng, **u-Lian Yan, Chen Chen… in Rice (2022)

Article

An ORFeome of rice E3 ubiquitin ligases for global analysis of the ubiquitination interactome

Ubiquitination is essential for many cellular processes in eukaryotes, including 26S proteasome-dependent protein degradation, cell cycle progression, transcriptional regulation, and signal transduction. Altho...

Ruyi Wang, **aoman You, Chongyang Zhang, Hong Fang, Min Wang, Fan Zhang… in Genome Biology (2022)

Article

Natural selenium stress influences the changes of antibiotic resistome in seleniferous forest soils

Metal(loid)s can promote the spread and enrichment of antibiotic resistance genes (ARGs) in the environment through a co-selection effect. However, it remains unclear whether exposure of microorganisms to vary...

Fang-Fang Wang, Guo-** Liu, Fan Zhang, Zong-Ming Li… in Environmental Microbiome (2022)

Article

Chromosome-level genome assembly of grass carp (Ctenopharyngodon idella) provides insights into its genome evolution

The grass carp has great economic value and occupies an important evolutionary position. Genomic information regarding this species could help better understand its rapid growth rate as well as its unique body...

Chang-Song Wu, Zi-You Ma, Guo-Dong Zheng, Shu-Ming Zou, Xu-Jie Zhang… in BMC Genomics (2022)