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On Pattern-Cladistic Analyses Based on Complete Plastid Genome Sequences
The fundamental Hennigian principle, grou** solely on synapomorphy, is seldom used in modern phylogenetics. In the submitted paper, we apply this...
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Plastid genome data provide new insights into the dynamic evolution of the tribe Ampelopsideae (Vitaceae)
BackgroundAmpelopsideae J. Wen & Z.L. Nie is a small-sized tribe of Vitaceae Juss., including ca. 47 species from four genera showing a disjunct...
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Removal of the large inverted repeat from the plastid genome reveals gene dosage effects and leads to increased genome copy number
The chloroplast genomes of most plants and algae contain a large inverted repeat (IR) region that separates two single-copy regions and harbours the...
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Plastid DNA is a major source of nuclear genome complexity and of RNA genes in the orphan crop moringa
BackgroundUnlike Transposable Elements (TEs) and gene/genome duplication, the role of the so-called nuclear plastid DNA sequences (NUPTs) in sha**...
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Plastid genome of Chenopodium petiolare from Trujillo, Peru
ObjectivesThe Peruvian Andean region is an important center for plant domestication. However, to date, there have been few genetic studies on native...
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Plastid genome and its phylogenetic implications of Asiatic Spiraea (Rosaceae)
BackgroundSpiraea L. is a genus comprising approximately 90 species that are distributed throughout the northern temperate regions. China is...
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Spatial and temporal characterization of the rich fraction of plastid DNA present in the nuclear genome of Moringa oleifera reveals unanticipated complexity in NUPTs´ formation
BackgroundBeyond the massive amounts of DNA and genes transferred from the protoorganelle genome to the nucleus during the endosymbiotic event that...
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Cannabaceae comparative analysis based on plastid genome evolution
Marijuana or hemp ( Cannabis sativa L.) of the Cannabaceae family represents one of the most economically important crops within the group that...
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The complete plastid genome and characteristics analysis of Achillea millefolium
Achillea is a crop with Chinese herbal characteristics and horticultural values. Its leaves and flowers contain aromatic oil, and the ripe herb can...
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Molecular identification of eight ethnomedicinal plants used by the indigenous communities of Bangladesh through the partial genome sequencing of three plastid markers
The effectiveness of plant-based therapies depends on precise botanical identification. However, tribal communities and practitioners sometimes...
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Control of plastid inheritance by environmental and genetic factors
The genomes of cytoplasmic organelles (mitochondria and plastids) are maternally inherited in most eukaryotes, thus excluding organellar genomes from...
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Dig up tall fescue plastid genomes for the identification of morphotype-specific DNA variants
BackgroundTall fescue ( Festuca arundinacea Schreb.) is an important cool-season perennial grass species. Hexaploid tall fescue has three distinct...
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A comparative study across the parasitic plants of Cuscuta subgenus Grammica (Convolvulaceae) reveals a possible loss of the plastid genome in its section Subulatae
Main conclusionMost species in Cuscuta subgenus Grammica retain many photosynthesis-related plastid genes, generally under purifying selection. A...
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Gene loss, genome rearrangement, and accelerated substitution rates in plastid genome of Hypericum ascyron (Hypericaceae)
BackgroundComparative genomic analysis exhibits dynamic evolution of plastid genome (plastome) in the clusioid clade of Malpighiales, which comprise...
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Use of plastid genome sequences in phylogeographic studies of tree species can be misleading without comprehensive sampling of co-occurring, related species
We aimed to test the extent to which plastid DNA gives incongruent phylogeographic patterns to nuclear DNA in a species of eucalypt, Eucalyptus...
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Complete plastid genome structure of 13 Asian Justicia (Acanthaceae) species: comparative genomics and phylogenetic analyses
BackgroundJusticia L. is the largest genus in Acanthaceae Juss. and widely distributed in tropical and subtropical regions of the world. Previous...
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Plastid engineering using episomal DNA
Key messageNovel episomal systems have the potential to accelerate plastid genetic engineering for application in plant synthetic biology.
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Characterization of the plastid genome of Cratoxylum species (Hypericaceae) and new insights into phylogenetic relationships
To expand the genomic information of Hypericaceae, particularly on Cratoxylum , we characterized seven novel complete plastid genomes (plastomes) of...
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Dynamic changes in the plastid and mitochondrial genomes of the angiosperm Corydalis pauciovulata (Papaveraceae)
BackgroundCorydalis DC., the largest genus in the family Papaveraceae, comprises > 465 species. Complete plastid genomes (plastomes) of Corydalis sho...
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Comparative analysis of the complete chloroplast genome sequences of four camellia species
Researching the photosynthetic characteristics based on the whole chloroplast genome sequence of Camellia osmantha cv ‘ yidan ’ is important for...