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The Poplar Microbiome
In recent years, plant–microorganism interactions and their impact on plant growth and health, and in turn on plant-driven ecosystem services (e.g.,...
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Multi-omics in Gut Microbiome
The microbiome of the human gut, a complex assembly of the microorganisms inhabiting the digestive tract, exerts a profound impact on human health....
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Multivariate Longitudinal Microbiome Models
Chapter 15 mainly introduced the glmmTMB, GLMMadaptive, and FZINBMM packages. However, all these three packages...
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Multi-omics in Study of Lung Microbiome
The lung microbiome influences the pathophysiology of pulmonary diseases, including asthma, chronic obstructive pulmonary disease (COPD), and cystic...
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Multi-omics in Viral Microbiome
The human virus microbiome, also known as the human virome, comprises the viruses that reside on or within the human body, either as pathogens or as...
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Microbiome Testing in Male Infertility
Infertility is a worldwide problem for couples of reproductive age. The etiologies are diverse, but approximately 50% are attributable to the male...
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Health Management of Rhizospheric Microbiome
The contemporary situation of climate change and population burst has rendered enormous pressure on food security. Sustainable management of...
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Human Microbiome and Lifestyle Disorders
The human microbiome builds a multifaceted and dynamic ecosystem with the body that shapes the metabolic as well as immunological behavior of human...
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Soil Microbiome in Nutrient Conservation for Plant Growth
The soil microbiome, a diverse and dynamic community of microorganisms residing beneath our feet, plays a vital role in the conservation and cycling...
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Multi-omics in Study of Skin Microbiome
Skin is the first line of defense of human body against infections where many diverse microbes, including fungi, viruses, bacteria are surviving....
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EMBED: Essential MicroBiomE Dynamics, a dimensionality reduction approach for longitudinal microbiome studies
Dimensionality reduction offers unique insights into high-dimensional microbiome dynamics by leveraging collective abundance fluctuations of multiple...
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Introduction to R for Microbiome Data
This chapter first introduces some useful R functions and R packages for microbiome data. Then it illustrates some specifically designed R packages...
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Human Microbiome and the Susceptibility to Infections
Human body comprises trillions of microbial cells associated with different parts of the body. The composition of microorganisms is different in all...
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Human Microbiome and the Neurological Disorders
A disease is a multifactorial dysfunction of system that affects the structure and function in an organism. In the same way, neurological disorders...
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Bioinformatic and Statistical Analysis of Microbiome Data
Since advances in next-generation sequencing (NGS) technique enabled to investigate uncultured microbiota and their genomes in unbiased manner, many...
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The Interplay of Gut Microbiome in Health and Diseases
The gut microbiome, a complex ecosystem of trillions of microorganisms in the human gastrointestinal tract, has emerged as a central player in...
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Microbiome ownership for Indigenous peoples
Several studies have reported increased microbial diversity, or distinct microbial community compositions, in the microbiomes of Indigenous peoples...
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Mass Spectrometry Applications to Study Human Microbiome
Microbiotas are an adaptable component of ecosystems, including human ecology. Microorganisms influence the chemistry of their specialized niche,...
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Microbiome Applications for Sustainable Food Systems
The present chapter, which combines theoretical and experimental knowledge, is divided into two parts. The first part provides critical insights to...
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Factors Affecting the Composition of the Human Microbiome
The microbiome has recently been considered an important component of the host, and its crucial role in maintaining host health is being unveiled. It...