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  1. Tumour-associated and non-tumour-associated bacteria co-abundance groups in colorectal cancer

    Background & aims

    Gut microbiota is closely related to the occurrence and development of colorectal cancer (CRC). However, the differences in...

    Yuxuan Liang, Qingrong Zhang, ... Haitao Chen in BMC Microbiology
    Article Open access 03 July 2024
  2. How the Ecology of Calcified Red Macroalgae is Investigated under a Chemical Approach? A Systematic Review and Bibliometric Study

    Characteristics such as calcareous morphology and life cycle are used to understand the ecology of calcified rhodophytes. However, there is limited...

    Amanda Cunha De Souza Coração, Brendo Araujo Gomes, ... Joel Campos De Paula in Journal of Chemical Ecology
    Article 03 July 2024
  3. Gapr for large-scale collaborative single-neuron reconstruction

    Whole-brain analysis of single-neuron morphology is crucial for unraveling the complex structure of the brain. However, large-scale neuron...

    Lingfeng Gou, Yanzhi Wang, ... Jun Yan in Nature Methods
    Article 03 July 2024
  4. Gut microbiota Parabacteroides distasonis enchances the efficacy of immunotherapy for bladder cancer by activating anti-tumor immune responses

    Objective

    Bladder cancer(BCa) was a disease that seriously affects patients’ quality of life and prognosis. To address this issue, many researches...

    Benlin Wang, Yifeng Qiu, ... Peng Wu in BMC Microbiology
    Article Open access 03 July 2024
  5. Impact of captivity and natural habitats on gut microbiome in Epinephelus akaara across seasons

    Background

    The gut microbiota significantly influences the health and growth of red-spotted grouper ( Epinephelus akaara ), a well-known commercial...

    Hang Sun, Fangyi Chen, ... Ke-Jian Wang in BMC Microbiology
    Article Open access 03 July 2024
  6. Biofilm-producing ability of methicillin-resistant Staphylococcus aureus clinically isolated in China

    Background

    Staphylococcus aureus , a commensal bacterium, colonizes the skin and mucous membranes of approximately 30% of the human population. Apart...

    **gyi Yu, Weihua Han, ... Fangyou Yu in BMC Microbiology
    Article Open access 03 July 2024
  7. Formic acid sandwich method is well-suited for filamentous fungi identification and improves turn around time using Zybio EXS2600 mass spectrometry

    Objectives

    Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) is extensively employed for the identification...

    Chongyang Wu, Ke** Ao, ... Dongdong Li in BMC Microbiology
    Article Open access 03 July 2024
  8. CRISPR-Cas3 and type I restriction-modification team up against blaKPC-IncF plasmid transfer in Klebsiella pneumoniae

    Objective

    We explored whether the Clustered regularly interspaced short palindromic repeat (CRISPR)-Cas and restriction-modification (R-M) systems are...

    Yang Yang, Peiyao Zhou, ... **aofei Jiang in BMC Microbiology
    Article Open access 03 July 2024
  9. cBAF generates subnucleosomes that expand OCT4 binding and function beyond DNA motifs at enhancers

    The canonical BRG/BRM-associated factor (cBAF) complex is essential for chromatin opening at enhancers in mammalian cells. However, the nature of the...

    Marina C. Nocente, Anida Mesihovic Karamitsos, ... Matthieu Gérard in Nature Structural & Molecular Biology
    Article 02 July 2024
  10. Structural basis of MALAT1 RNA maturation and mascRNA biogenesis

    The metastasis-associated lung adenocarcinoma transcript 1 (MALAT1) long noncoding RNA (lncRNA) has key roles in regulating transcription, splicing,...

    Ilias Skeparnias, Charles Bou-Nader, ... **wei Zhang in Nature Structural & Molecular Biology
    Article 02 July 2024
  11. fENko-Kae01 is a flagellum-specific jumbo phage infecting Klebsiella aerogenes

    Background

    Klebsiella aerogenes is an opportunistic pathogen that causes a wide variety of infections. Due to the rising problem of antibiotic...

    Kira Ranta, Mikael Skurnik, Saija Kiljunen in BMC Microbiology
    Article Open access 01 July 2024
  12. Single-base tiled screen unveils design principles of PspCas13b for potent and off-target-free RNA silencing

    The development of precise RNA-editing tools is essential for the advancement of RNA therapeutics. CRISPR (clustered regularly interspaced short...

    Wenxin Hu, Amit Kumar, ... Mohamed Fareh in Nature Structural & Molecular Biology
    Article Open access 01 July 2024
  13. Asymmetric apical domain states of mitochondrial Hsp60 coordinate substrate engagement and chaperonin assembly

    The mitochondrial chaperonin, mitochondrial heat shock protein 60 (mtHsp60), promotes the folding of newly imported and transiently misfolded...

    Julian R. Braxton, Hao Shao, ... Daniel R. Southworth in Nature Structural & Molecular Biology
    Article Open access 01 July 2024
  14. Correction: Study of the gut microbiome in Egyptian patients with Parkinson’s Disease

    Mohammad Mehanna, Suzan Abou-Raya, ... Essameldin AbdelKhaliq in BMC Microbiology
    Article Open access 01 July 2024
  15. Predicting glycan structure from tandem mass spectrometry via deep learning

    Glycans constitute the most complicated post-translational modification, modulating protein activity in health and disease. However, structural...

    James Urban, Chunsheng **, ... Daniel Bojar in Nature Methods
    Article Open access 01 July 2024
  16. Alterations of the bile microbiome is associated with progression-free survival in pancreatic ductal adenocarcinoma patients

    Background

    Patients with pancreatic ductal adenocarcinoma (PDAC) display an altered oral, gastrointestinal, and intra-pancreatic microbiome compared...

    Hang Jiang, Yitong Tian, ... Yuhua Zhang in BMC Microbiology
    Article Open access 01 July 2024
  17. Early intermediates in bacterial RNA polymerase promoter melting visualized by time-resolved cryo-electron microscopy

    During formation of the transcription-competent open complex (RPo) by bacterial RNA polymerases (RNAPs), transient intermediates pile up before...

    Ruth M. Saecker, Andreas U. Mueller, ... Seth A. Darst in Nature Structural & Molecular Biology
    Article 01 July 2024
  18. Lipopeptides from Bacillus velezensis ZLP-101 and their mode of action against bean aphids Acyrthosiphon pisum Harris

    Background

    Natural products are important sources for the discovery of new biopesticides to control the worldwide destructive pests Acyrthosiphon...

    Qiuyue Liu, Wenya Zhao, ... Li** Zhang in BMC Microbiology
    Article Open access 29 June 2024
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